miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7227 3' -51 NC_001900.1 + 40001 0.68 0.788469
Target:  5'- ---cGCCGGuaucucgcaGGUGCAUGGCCucguaGCCGu -3'
miRNA:   3'- cguuCGGCU---------UCAUGUACUGGua---CGGC- -5'
7227 3' -51 NC_001900.1 + 40422 0.69 0.767664
Target:  5'- aGCAGGCCGucGgagacccgGCAgccGACCAgaGCCGu -3'
miRNA:   3'- -CGUUCGGCuuCa-------UGUa--CUGGUa-CGGC- -5'
7227 3' -51 NC_001900.1 + 40509 0.68 0.778148
Target:  5'- gGCuugucuCCGAAGUugAUGACaggaAUGCCa -3'
miRNA:   3'- -CGuuc---GGCUUCAugUACUGg---UACGGc -5'
7227 3' -51 NC_001900.1 + 41310 0.67 0.827866
Target:  5'- -aGGGuuGggGcACAUGACCGuuUGUCGu -3'
miRNA:   3'- cgUUCggCuuCaUGUACUGGU--ACGGC- -5'
7227 3' -51 NC_001900.1 + 41517 0.68 0.778148
Target:  5'- uGCuccaCGAAGUACGUGACguUGuCCGa -3'
miRNA:   3'- -CGuucgGCUUCAUGUACUGguAC-GGC- -5'
7227 3' -51 NC_001900.1 + 42428 0.67 0.855114
Target:  5'- cCAGGcCCGAGGggaucggGC-UGGCCcGUGCCGu -3'
miRNA:   3'- cGUUC-GGCUUCa------UGuACUGG-UACGGC- -5'
7227 3' -51 NC_001900.1 + 42565 0.7 0.656633
Target:  5'- aGCGGGCCGAGcUGgGgGACCGcGCCGu -3'
miRNA:   3'- -CGUUCGGCUUcAUgUaCUGGUaCGGC- -5'
7227 3' -51 NC_001900.1 + 44042 0.68 0.808568
Target:  5'- uGCAAGCgGugugcGAGUACcgGcccccgccGCCGUGCUGg -3'
miRNA:   3'- -CGUUCGgC-----UUCAUGuaC--------UGGUACGGC- -5'
7227 3' -51 NC_001900.1 + 44519 0.66 0.887872
Target:  5'- cGCuGGCCGuuGUACGgaccUGACCAcGUCc -3'
miRNA:   3'- -CGuUCGGCuuCAUGU----ACUGGUaCGGc -5'
7227 3' -51 NC_001900.1 + 45733 0.7 0.702036
Target:  5'- cGCAGGCCaGggGgugggcugcUugGUGACCggGUCGa -3'
miRNA:   3'- -CGUUCGG-CuuC---------AugUACUGGuaCGGC- -5'
7227 3' -51 NC_001900.1 + 46136 0.66 0.887872
Target:  5'- ---cGCCGAgcuGGUcgAUGACCAgGCCGu -3'
miRNA:   3'- cguuCGGCU---UCAugUACUGGUaCGGC- -5'
7227 3' -51 NC_001900.1 + 46786 0.66 0.872032
Target:  5'- cGCAGGCCGAucccuugGCGUuGAUCAgGUCGa -3'
miRNA:   3'- -CGUUCGGCUuca----UGUA-CUGGUaCGGC- -5'
7227 3' -51 NC_001900.1 + 46874 0.68 0.818323
Target:  5'- uGguGGCCGAgaggcgGGUgaucACGUGGCCAUcucgGCCa -3'
miRNA:   3'- -CguUCGGCU------UCA----UGUACUGGUA----CGGc -5'
7227 3' -51 NC_001900.1 + 47219 0.68 0.798613
Target:  5'- cGCAGGCCGAGGc-CGUcACCcgGCUu -3'
miRNA:   3'- -CGUUCGGCUUCauGUAcUGGuaCGGc -5'
7227 3' -51 NC_001900.1 + 47380 0.66 0.872032
Target:  5'- --cAGCgCGGAGUagaccggcgggACGUGGCCcuUGCCGa -3'
miRNA:   3'- cguUCG-GCUUCA-----------UGUACUGGu-ACGGC- -5'
7227 3' -51 NC_001900.1 + 48259 0.66 0.88009
Target:  5'- aGCGGGCCGuuuuGGUAUcgGcAUCgAUGCCc -3'
miRNA:   3'- -CGUUCGGCu---UCAUGuaC-UGG-UACGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.