miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7227 5' -55.8 NC_001900.1 + 129 0.66 0.619052
Target:  5'- gACAcauGCACGcauacgCGUGCUGACCUGCg- -3'
miRNA:   3'- aUGU---UGUGCca----GCGUGACUGGGCGau -5'
7227 5' -55.8 NC_001900.1 + 30299 0.66 0.607832
Target:  5'- cGCGACAuccuCGGUCGCGUUGACCUuCUc -3'
miRNA:   3'- aUGUUGU----GCCAGCGUGACUGGGcGAu -5'
7227 5' -55.8 NC_001900.1 + 31345 0.66 0.607832
Target:  5'- aGCGAcCACGGUCaGCACaGGCCC-Ca- -3'
miRNA:   3'- aUGUU-GUGCCAG-CGUGaCUGGGcGau -5'
7227 5' -55.8 NC_001900.1 + 42786 0.66 0.596634
Target:  5'- aGCGACGauGUCGCcgauguucgcgGCUGcGCCCGCg- -3'
miRNA:   3'- aUGUUGUgcCAGCG-----------UGAC-UGGGCGau -5'
7227 5' -55.8 NC_001900.1 + 21265 0.66 0.596634
Target:  5'- -uCGGCGCGGUCggugGCGCgaucGACCUGCc- -3'
miRNA:   3'- auGUUGUGCCAG----CGUGa---CUGGGCGau -5'
7227 5' -55.8 NC_001900.1 + 37267 0.66 0.585467
Target:  5'- gACAGgGCcGUCGUACacGGCCCGCa- -3'
miRNA:   3'- aUGUUgUGcCAGCGUGa-CUGGGCGau -5'
7227 5' -55.8 NC_001900.1 + 10944 0.67 0.57434
Target:  5'- gUACGACGUGGUCGaC-CUGACgCGCa- -3'
miRNA:   3'- -AUGUUGUGCCAGC-GuGACUGgGCGau -5'
7227 5' -55.8 NC_001900.1 + 33048 0.67 0.552243
Target:  5'- cGCAGUACGGUCGCguacaGCUcGGCCCGg-- -3'
miRNA:   3'- aUGUUGUGCCAGCG-----UGA-CUGGGCgau -5'
7227 5' -55.8 NC_001900.1 + 9778 0.67 0.530411
Target:  5'- -uCGGCGCGGUCcCGgUGGuCCCGCUu -3'
miRNA:   3'- auGUUGUGCCAGcGUgACU-GGGCGAu -5'
7227 5' -55.8 NC_001900.1 + 18553 0.68 0.487765
Target:  5'- cACGGCcCGGaucugcagUGCGCUGGCaCCGCUGg -3'
miRNA:   3'- aUGUUGuGCCa-------GCGUGACUG-GGCGAU- -5'
7227 5' -55.8 NC_001900.1 + 43787 0.69 0.427055
Target:  5'- gGCAGCAgugcuaccgcuCGGUUGUACgcgaGACCCGUUGc -3'
miRNA:   3'- aUGUUGU-----------GCCAGCGUGa---CUGGGCGAU- -5'
7227 5' -55.8 NC_001900.1 + 8785 0.74 0.228611
Target:  5'- gGCcACACGGUCGaggACaUGACCCGCg- -3'
miRNA:   3'- aUGuUGUGCCAGCg--UG-ACUGGGCGau -5'
7227 5' -55.8 NC_001900.1 + 6496 0.75 0.174076
Target:  5'- aACGGCGCGGUCccccaGCUcGGCCCGCUGg -3'
miRNA:   3'- aUGUUGUGCCAGcg---UGA-CUGGGCGAU- -5'
7227 5' -55.8 NC_001900.1 + 10528 1.05 0.001277
Target:  5'- gUACAACACGGUCGCACUGACCCGCUAc -3'
miRNA:   3'- -AUGUUGUGCCAGCGUGACUGGGCGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.