miRNA display CGI


Results 1 - 15 of 15 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7228 5' -56.7 NC_001900.1 + 18785 0.66 0.588781
Target:  5'- --gUCGCGgaggcGUUCGAgGAGCUGGGAc- -3'
miRNA:   3'- acgAGCGU-----CGAGUUgCUCGACCCUcu -5'
7228 5' -56.7 NC_001900.1 + 19668 0.67 0.53414
Target:  5'- cGCUCGCGagaucGCUCGACugauGGCcGaGGAGAu -3'
miRNA:   3'- aCGAGCGU-----CGAGUUGc---UCGaC-CCUCU- -5'
7228 5' -56.7 NC_001900.1 + 43116 0.67 0.491757
Target:  5'- cGUUCuugauCAGCUCAugGAGCUGccaGAGGu -3'
miRNA:   3'- aCGAGc----GUCGAGUugCUCGACc--CUCU- -5'
7228 5' -56.7 NC_001900.1 + 23243 0.68 0.461015
Target:  5'- aGCcUGCGGUUCggUGAGCUGaucGAGAu -3'
miRNA:   3'- aCGaGCGUCGAGuuGCUCGACc--CUCU- -5'
7228 5' -56.7 NC_001900.1 + 36237 0.68 0.450995
Target:  5'- cGC-CGaucuGGCcccaGAUGAGCUGGGAGAa -3'
miRNA:   3'- aCGaGCg---UCGag--UUGCUCGACCCUCU- -5'
7228 5' -56.7 NC_001900.1 + 38508 0.68 0.43132
Target:  5'- gGCUUgGgAGCUggCGugGGGUUGGGGGAg -3'
miRNA:   3'- aCGAG-CgUCGA--GUugCUCGACCCUCU- -5'
7228 5' -56.7 NC_001900.1 + 3109 0.69 0.412156
Target:  5'- gUGCUCaaGCAGCgccucgccaaGGCGAGCggcGGGGGGu -3'
miRNA:   3'- -ACGAG--CGUCGag--------UUGCUCGa--CCCUCU- -5'
7228 5' -56.7 NC_001900.1 + 11731 0.69 0.412156
Target:  5'- cUGCUCGCGacaCUCGAaucacCGAGCU-GGAGAa -3'
miRNA:   3'- -ACGAGCGUc--GAGUU-----GCUCGAcCCUCU- -5'
7228 5' -56.7 NC_001900.1 + 3038 0.69 0.402774
Target:  5'- cGC-CGC-GCUCGGCG-GCUGGGcauGAa -3'
miRNA:   3'- aCGaGCGuCGAGUUGCuCGACCCu--CU- -5'
7228 5' -56.7 NC_001900.1 + 18684 0.69 0.402774
Target:  5'- -aCUCGCAGCagcuugcCGACaaguGGCUGGGGGAg -3'
miRNA:   3'- acGAGCGUCGa------GUUGc---UCGACCCUCU- -5'
7228 5' -56.7 NC_001900.1 + 8323 0.71 0.278497
Target:  5'- cGCUCGCGGCgcugaCGACaucgcugaccgcuGGGCUuGGGGGAu -3'
miRNA:   3'- aCGAGCGUCGa----GUUG-------------CUCGA-CCCUCU- -5'
7228 5' -56.7 NC_001900.1 + 42557 0.73 0.214887
Target:  5'- gGCUgGcCAGCgggcCGAGCUGGGGGAc -3'
miRNA:   3'- aCGAgC-GUCGaguuGCUCGACCCUCU- -5'
7228 5' -56.7 NC_001900.1 + 11312 0.75 0.15923
Target:  5'- cGCUCuGCAGCUCuggauCGAcGCUGGGAa- -3'
miRNA:   3'- aCGAG-CGUCGAGuu---GCU-CGACCCUcu -5'
7228 5' -56.7 NC_001900.1 + 41862 0.77 0.116586
Target:  5'- cGCUgGCcaAGCUCGAUGAGCUGGGcuaccacGGAg -3'
miRNA:   3'- aCGAgCG--UCGAGUUGCUCGACCC-------UCU- -5'
7228 5' -56.7 NC_001900.1 + 9664 1.08 0.000587
Target:  5'- cUGCUCGCAGCUCAACGAGCUGGGAGAc -3'
miRNA:   3'- -ACGAGCGUCGAGUUGCUCGACCCUCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.