miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7229 3' -52.7 NC_001900.1 + 9138 0.66 0.824158
Target:  5'- gGGCCGGGugGugGCCGucCGAUGACAg-- -3'
miRNA:   3'- aCCGGUCC--UugUGGU--GCUGUUGUagu -5'
7229 3' -52.7 NC_001900.1 + 46909 0.66 0.814601
Target:  5'- cGGCCAcGAACGCCcuCGGguGCGUUu -3'
miRNA:   3'- aCCGGUcCUUGUGGu-GCUguUGUAGu -5'
7229 3' -52.7 NC_001900.1 + 41713 0.66 0.814601
Target:  5'- cGGCCuugcucAGGuucucuGAgGCCACGuCGGCGUCGg -3'
miRNA:   3'- aCCGG------UCC------UUgUGGUGCuGUUGUAGU- -5'
7229 3' -52.7 NC_001900.1 + 9405 0.66 0.804841
Target:  5'- cGGCuCGGGGACGCCGacgaGGCgGACGa-- -3'
miRNA:   3'- aCCG-GUCCUUGUGGUg---CUG-UUGUagu -5'
7229 3' -52.7 NC_001900.1 + 780 0.66 0.804841
Target:  5'- -uGCCAGcGGCGCUaaACGAgGGCAUCGa -3'
miRNA:   3'- acCGGUCcUUGUGG--UGCUgUUGUAGU- -5'
7229 3' -52.7 NC_001900.1 + 1446 0.66 0.804841
Target:  5'- gGGCCguGGGAGCAgUugGAgGACGa-- -3'
miRNA:   3'- aCCGG--UCCUUGUgGugCUgUUGUagu -5'
7229 3' -52.7 NC_001900.1 + 46876 0.66 0.804841
Target:  5'- gUGGCCGagaggcGGGugAUCACGugGcCAUCu -3'
miRNA:   3'- -ACCGGU------CCUugUGGUGCugUuGUAGu -5'
7229 3' -52.7 NC_001900.1 + 23733 0.66 0.804841
Target:  5'- uUGGUCGcuGGCACgGuCGACGGCAUCGa -3'
miRNA:   3'- -ACCGGUccUUGUGgU-GCUGUUGUAGU- -5'
7229 3' -52.7 NC_001900.1 + 5329 0.66 0.794887
Target:  5'- cGGCgGuGGAACGgcaaggagugggUCGCGugAACAUCGu -3'
miRNA:   3'- aCCGgU-CCUUGU------------GGUGCugUUGUAGU- -5'
7229 3' -52.7 NC_001900.1 + 1196 0.66 0.794887
Target:  5'- cGGCCGGGGcgguuuagGCACC--GGCAACG-CAg -3'
miRNA:   3'- aCCGGUCCU--------UGUGGugCUGUUGUaGU- -5'
7229 3' -52.7 NC_001900.1 + 18345 0.66 0.794887
Target:  5'- aGGCCaAGGAACugGCCA--GCAGCGUgAa -3'
miRNA:   3'- aCCGG-UCCUUG--UGGUgcUGUUGUAgU- -5'
7229 3' -52.7 NC_001900.1 + 9509 0.66 0.794887
Target:  5'- cGGCCGGucguACAUCACGAuCAGCcgCc -3'
miRNA:   3'- aCCGGUCcu--UGUGGUGCU-GUUGuaGu -5'
7229 3' -52.7 NC_001900.1 + 20479 0.66 0.794887
Target:  5'- aGaGCCaguGGGAGaucaACCACGACGGCGa-- -3'
miRNA:   3'- aC-CGG---UCCUUg---UGGUGCUGUUGUagu -5'
7229 3' -52.7 NC_001900.1 + 23010 0.66 0.784751
Target:  5'- gGGCCGGGAugGguaagcaguaCC-CGACGGCAc-- -3'
miRNA:   3'- aCCGGUCCUugU----------GGuGCUGUUGUagu -5'
7229 3' -52.7 NC_001900.1 + 44443 0.66 0.784751
Target:  5'- cUGGCCGGGAGuccccCGCCACG-CGAa---- -3'
miRNA:   3'- -ACCGGUCCUU-----GUGGUGCuGUUguagu -5'
7229 3' -52.7 NC_001900.1 + 21159 0.66 0.784751
Target:  5'- cUGGCCGGuGGACAguCCGCucCgGGCAUCAa -3'
miRNA:   3'- -ACCGGUC-CUUGU--GGUGcuG-UUGUAGU- -5'
7229 3' -52.7 NC_001900.1 + 11634 0.67 0.763984
Target:  5'- gUGGUCGGGuucaucggcGACACCcagccCGACGAgGUCGu -3'
miRNA:   3'- -ACCGGUCC---------UUGUGGu----GCUGUUgUAGU- -5'
7229 3' -52.7 NC_001900.1 + 7147 0.67 0.763984
Target:  5'- cGGCCGGaucgugauGAAgGCCAgCGGCuuCAUCGg -3'
miRNA:   3'- aCCGGUC--------CUUgUGGU-GCUGuuGUAGU- -5'
7229 3' -52.7 NC_001900.1 + 12845 0.67 0.753378
Target:  5'- aGGCgauCAGGGuucggUACgACGACGGCGUCGu -3'
miRNA:   3'- aCCG---GUCCUu----GUGgUGCUGUUGUAGU- -5'
7229 3' -52.7 NC_001900.1 + 22166 0.67 0.753378
Target:  5'- aGGCCAGac-CGCCgACGGCGACGg-- -3'
miRNA:   3'- aCCGGUCcuuGUGG-UGCUGUUGUagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.