miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7229 5' -56.5 NC_001900.1 + 13201 0.66 0.645613
Target:  5'- aACgggAUGCCugGCUcGGagauGUaCCGAGCc -3'
miRNA:   3'- gUGa--UGCGGugCGA-CCg---CAaGGCUCG- -5'
7229 5' -56.5 NC_001900.1 + 24590 0.66 0.623638
Target:  5'- aCGCUG-GCCACacCUGGuCGUUgCCGAGg -3'
miRNA:   3'- -GUGAUgCGGUGc-GACC-GCAA-GGCUCg -5'
7229 5' -56.5 NC_001900.1 + 37072 0.66 0.623638
Target:  5'- gACgcCGCCACGgUGGCcGUgcgUCGAGa -3'
miRNA:   3'- gUGauGCGGUGCgACCG-CAa--GGCUCg -5'
7229 5' -56.5 NC_001900.1 + 4484 0.66 0.612656
Target:  5'- gCACUACGCCaacgACGUUGGagccuucaCCGAGg -3'
miRNA:   3'- -GUGAUGCGG----UGCGACCgcaa----GGCUCg -5'
7229 5' -56.5 NC_001900.1 + 10314 0.66 0.612656
Target:  5'- uGCUcCGCauggagACGguCUGGCGUgacCCGAGCa -3'
miRNA:   3'- gUGAuGCGg-----UGC--GACCGCAa--GGCUCG- -5'
7229 5' -56.5 NC_001900.1 + 33223 0.66 0.601692
Target:  5'- -cCUcCGUgACGCUGGCGUacUUCG-GCa -3'
miRNA:   3'- guGAuGCGgUGCGACCGCA--AGGCuCG- -5'
7229 5' -56.5 NC_001900.1 + 47063 0.66 0.601692
Target:  5'- aCAC-GCGcCCACGCUGcGaCGUaggUCGGGCu -3'
miRNA:   3'- -GUGaUGC-GGUGCGAC-C-GCAa--GGCUCG- -5'
7229 5' -56.5 NC_001900.1 + 48680 0.66 0.601692
Target:  5'- gGCUGuCGUCACGCUGucgcuguCGUcgCCGGGUg -3'
miRNA:   3'- gUGAU-GCGGUGCGACc------GCAa-GGCUCG- -5'
7229 5' -56.5 NC_001900.1 + 11993 0.66 0.590753
Target:  5'- aCGC-ACgGCCACcgUGGCGgcgUCCGGGUg -3'
miRNA:   3'- -GUGaUG-CGGUGcgACCGCa--AGGCUCG- -5'
7229 5' -56.5 NC_001900.1 + 5229 0.67 0.579849
Target:  5'- gCGCUggccguucccgACGCCAgaaGC-GGCGUUCCGGuucGCu -3'
miRNA:   3'- -GUGA-----------UGCGGUg--CGaCCGCAAGGCU---CG- -5'
7229 5' -56.5 NC_001900.1 + 2554 0.67 0.558179
Target:  5'- cCGCUACGUCgaaGCUGuGCGUgacgCCGAa- -3'
miRNA:   3'- -GUGAUGCGGug-CGAC-CGCAa---GGCUcg -5'
7229 5' -56.5 NC_001900.1 + 39640 0.67 0.551721
Target:  5'- cCACUGCcacagcucuucguccGCCuCGUcGGCGUccCCGAGCc -3'
miRNA:   3'- -GUGAUG---------------CGGuGCGaCCGCAa-GGCUCG- -5'
7229 5' -56.5 NC_001900.1 + 41232 0.67 0.547429
Target:  5'- gGgUugGCCuuGCggggcaUGGCGUUCgGAGUg -3'
miRNA:   3'- gUgAugCGGugCG------ACCGCAAGgCUCG- -5'
7229 5' -56.5 NC_001900.1 + 23825 0.67 0.547429
Target:  5'- gGCUAU-CgGCGCUGGC-UUCCG-GCg -3'
miRNA:   3'- gUGAUGcGgUGCGACCGcAAGGCuCG- -5'
7229 5' -56.5 NC_001900.1 + 46764 0.67 0.536745
Target:  5'- uGCUuCGaUCugGCUGGCGUguUCCGccucAGCc -3'
miRNA:   3'- gUGAuGC-GGugCGACCGCA--AGGC----UCG- -5'
7229 5' -56.5 NC_001900.1 + 18771 0.68 0.515603
Target:  5'- aCGCgaccgaggAUGUCGCGgaGGCGUUCgagGAGCu -3'
miRNA:   3'- -GUGa-------UGCGGUGCgaCCGCAAGg--CUCG- -5'
7229 5' -56.5 NC_001900.1 + 15971 0.68 0.514554
Target:  5'- aGCUGauCGCCGCGCUGGaCGaggaagaggaUcccaggaUCCGGGCc -3'
miRNA:   3'- gUGAU--GCGGUGCGACC-GC----------A-------AGGCUCG- -5'
7229 5' -56.5 NC_001900.1 + 26400 0.68 0.505158
Target:  5'- gCACUcgacCGCUGCGCUGGg--UCCGcAGCg -3'
miRNA:   3'- -GUGAu---GCGGUGCGACCgcaAGGC-UCG- -5'
7229 5' -56.5 NC_001900.1 + 27906 0.68 0.494805
Target:  5'- uCGCUGgGCCGCuGCcgUGGCGaucCCGAGg -3'
miRNA:   3'- -GUGAUgCGGUG-CG--ACCGCaa-GGCUCg -5'
7229 5' -56.5 NC_001900.1 + 3435 0.68 0.494805
Target:  5'- ---aACGuCCACGCUGGCcuggCCGuGGCa -3'
miRNA:   3'- gugaUGC-GGUGCGACCGcaa-GGC-UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.