miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7229 5' -56.5 NC_001900.1 + 8984 1.11 0.00048
Target:  5'- cCACUACGCCACGCUGGCGUUCCGAGCu -3'
miRNA:   3'- -GUGAUGCGGUGCGACCGCAAGGCUCG- -5'
7229 5' -56.5 NC_001900.1 + 8639 0.78 0.11373
Target:  5'- gCACcgGCGCCcCGCUGGUGUUCCugcacGGGCu -3'
miRNA:   3'- -GUGa-UGCGGuGCGACCGCAAGG-----CUCG- -5'
7229 5' -56.5 NC_001900.1 + 3035 0.76 0.154395
Target:  5'- --aUGCGCCGCGCUcGGCGg-CUGGGCa -3'
miRNA:   3'- gugAUGCGGUGCGA-CCGCaaGGCUCG- -5'
7229 5' -56.5 NC_001900.1 + 13758 0.75 0.176934
Target:  5'- cUACUGCGuCCACGaCUGGCGcaUCGAGUu -3'
miRNA:   3'- -GUGAUGC-GGUGC-GACCGCaaGGCUCG- -5'
7229 5' -56.5 NC_001900.1 + 23596 0.72 0.298055
Target:  5'- -----aGCCACGCUGGCGgcucaggCCGGuGCg -3'
miRNA:   3'- gugaugCGGUGCGACCGCaa-----GGCU-CG- -5'
7229 5' -56.5 NC_001900.1 + 9068 0.71 0.336955
Target:  5'- aCGCUGCaGUCuGCGCUGuccucGCGUUCgGGGCg -3'
miRNA:   3'- -GUGAUG-CGG-UGCGAC-----CGCAAGgCUCG- -5'
7229 5' -56.5 NC_001900.1 + 15342 0.7 0.379425
Target:  5'- aCGCUGCaCCAgcucCUGGCGUUCCaGGCg -3'
miRNA:   3'- -GUGAUGcGGUgc--GACCGCAAGGcUCG- -5'
7229 5' -56.5 NC_001900.1 + 12011 0.69 0.415889
Target:  5'- ---aACGCCAUGaagGGCGUUCUcGGCa -3'
miRNA:   3'- gugaUGCGGUGCga-CCGCAAGGcUCG- -5'
7229 5' -56.5 NC_001900.1 + 26310 0.69 0.464353
Target:  5'- aCGCga-GCCACGCUucGGCGUccaUCCGGu- -3'
miRNA:   3'- -GUGaugCGGUGCGA--CCGCA---AGGCUcg -5'
7229 5' -56.5 NC_001900.1 + 43660 0.69 0.464353
Target:  5'- ---gGCGuCCcCGCUGGCGUacUCCGcAGUg -3'
miRNA:   3'- gugaUGC-GGuGCGACCGCA--AGGC-UCG- -5'
7229 5' -56.5 NC_001900.1 + 17794 0.68 0.474398
Target:  5'- uGCUGC-CCACGCUGGUGgacagcUUCaAGCa -3'
miRNA:   3'- gUGAUGcGGUGCGACCGCa-----AGGcUCG- -5'
7229 5' -56.5 NC_001900.1 + 3435 0.68 0.494805
Target:  5'- ---aACGuCCACGCUGGCcuggCCGuGGCa -3'
miRNA:   3'- gugaUGC-GGUGCGACCGcaa-GGC-UCG- -5'
7229 5' -56.5 NC_001900.1 + 27906 0.68 0.494805
Target:  5'- uCGCUGgGCCGCuGCcgUGGCGaucCCGAGg -3'
miRNA:   3'- -GUGAUgCGGUG-CG--ACCGCaa-GGCUCg -5'
7229 5' -56.5 NC_001900.1 + 40212 0.68 0.494805
Target:  5'- ---aACGCCACcggguuguucggGCUGGCGUUgaccUUGAGCu -3'
miRNA:   3'- gugaUGCGGUG------------CGACCGCAA----GGCUCG- -5'
7229 5' -56.5 NC_001900.1 + 26400 0.68 0.505158
Target:  5'- gCACUcgacCGCUGCGCUGGg--UCCGcAGCg -3'
miRNA:   3'- -GUGAu---GCGGUGCGACCgcaAGGC-UCG- -5'
7229 5' -56.5 NC_001900.1 + 15971 0.68 0.514554
Target:  5'- aGCUGauCGCCGCGCUGGaCGaggaagaggaUcccaggaUCCGGGCc -3'
miRNA:   3'- gUGAU--GCGGUGCGACC-GC----------A-------AGGCUCG- -5'
7229 5' -56.5 NC_001900.1 + 18771 0.68 0.515603
Target:  5'- aCGCgaccgaggAUGUCGCGgaGGCGUUCgagGAGCu -3'
miRNA:   3'- -GUGa-------UGCGGUGCgaCCGCAAGg--CUCG- -5'
7229 5' -56.5 NC_001900.1 + 46764 0.67 0.536745
Target:  5'- uGCUuCGaUCugGCUGGCGUguUCCGccucAGCc -3'
miRNA:   3'- gUGAuGC-GGugCGACCGCA--AGGC----UCG- -5'
7229 5' -56.5 NC_001900.1 + 23825 0.67 0.547429
Target:  5'- gGCUAU-CgGCGCUGGC-UUCCG-GCg -3'
miRNA:   3'- gUGAUGcGgUGCGACCGcAAGGCuCG- -5'
7229 5' -56.5 NC_001900.1 + 41232 0.67 0.547429
Target:  5'- gGgUugGCCuuGCggggcaUGGCGUUCgGAGUg -3'
miRNA:   3'- gUgAugCGGugCG------ACCGCAAGgCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.