Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
7230 | 3' | -60.9 | NC_001900.1 | + | 11752 | 0.66 | 0.39586 |
Target: 5'- -cCGAgCUGGAGAacgagcugggacagGCuuGGAUCCGGc -3' miRNA: 3'- uaGCUgGGCCUCU--------------CGggCCUAGGCUu -5' |
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7230 | 3' | -60.9 | NC_001900.1 | + | 5911 | 0.66 | 0.389645 |
Target: 5'- --aGaACCCGGAcGGCUCGGAgccCCGGAg -3' miRNA: 3'- uagC-UGGGCCUcUCGGGCCUa--GGCUU- -5' |
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7230 | 3' | -60.9 | NC_001900.1 | + | 28979 | 0.66 | 0.372242 |
Target: 5'- uGUUGGCCCGGAacucgaaguaGaAGCCgGGAggCCGAc -3' miRNA: 3'- -UAGCUGGGCCU----------C-UCGGgCCUa-GGCUu -5' |
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7230 | 3' | -60.9 | NC_001900.1 | + | 9678 | 0.66 | 0.347146 |
Target: 5'- -aCGAgCUGG-GAGaCCCGGAUCCu-- -3' miRNA: 3'- uaGCUgGGCCuCUC-GGGCCUAGGcuu -5' |
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7230 | 3' | -60.9 | NC_001900.1 | + | 12633 | 0.67 | 0.323284 |
Target: 5'- -gCGGCCCGGuGAGgCCGuGAUCUa-- -3' miRNA: 3'- uaGCUGGGCCuCUCgGGC-CUAGGcuu -5' |
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7230 | 3' | -60.9 | NC_001900.1 | + | 2222 | 0.67 | 0.315606 |
Target: 5'- -gUGGCUgGGAGGGCCUGGAgaUCCu-- -3' miRNA: 3'- uaGCUGGgCCUCUCGGGCCU--AGGcuu -5' |
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7230 | 3' | -60.9 | NC_001900.1 | + | 11271 | 0.67 | 0.315606 |
Target: 5'- uUCGACgUGGAGAacugGCCCGGAaaggCCGc- -3' miRNA: 3'- uAGCUGgGCCUCU----CGGGCCUa---GGCuu -5' |
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7230 | 3' | -60.9 | NC_001900.1 | + | 12873 | 0.68 | 0.293403 |
Target: 5'- cGUCGuCCCGGAGAgggGUUCGGcugCCGAGg -3' miRNA: 3'- -UAGCuGGGCCUCU---CGGGCCua-GGCUU- -5' |
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7230 | 3' | -60.9 | NC_001900.1 | + | 15419 | 0.68 | 0.292685 |
Target: 5'- cGUCGACCCGGAcgccuacgaGGGCgUGGAUgucgccgCCGAu -3' miRNA: 3'- -UAGCUGGGCCU---------CUCGgGCCUA-------GGCUu -5' |
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7230 | 3' | -60.9 | NC_001900.1 | + | 25497 | 0.68 | 0.272438 |
Target: 5'- -aCGGCCCGGAG-GUCgUGGAUgCGGAg -3' miRNA: 3'- uaGCUGGGCCUCuCGG-GCCUAgGCUU- -5' |
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7230 | 3' | -60.9 | NC_001900.1 | + | 27450 | 0.69 | 0.234141 |
Target: 5'- uUCGACgCGGAucAGCCUGGggCCGAGc -3' miRNA: 3'- uAGCUGgGCCUc-UCGGGCCuaGGCUU- -5' |
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7230 | 3' | -60.9 | NC_001900.1 | + | 3258 | 0.7 | 0.211199 |
Target: 5'- uUCGACCUGGAGAugcucuGCCUGGucaCCGGc -3' miRNA: 3'- uAGCUGGGCCUCU------CGGGCCua-GGCUu -5' |
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7230 | 3' | -60.9 | NC_001900.1 | + | 28135 | 0.7 | 0.205774 |
Target: 5'- -aCGaACCCGGuGAGCCaGGAgccgCCGAAg -3' miRNA: 3'- uaGC-UGGGCCuCUCGGgCCUa---GGCUU- -5' |
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7230 | 3' | -60.9 | NC_001900.1 | + | 7921 | 1.04 | 0.000533 |
Target: 5'- gAUCGACCCGGAGAGCCCGGAUCCGAAg -3' miRNA: 3'- -UAGCUGGGCCUCUCGGGCCUAGGCUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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