miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7230 3' -60.9 NC_001900.1 + 11752 0.66 0.39586
Target:  5'- -cCGAgCUGGAGAacgagcugggacagGCuuGGAUCCGGc -3'
miRNA:   3'- uaGCUgGGCCUCU--------------CGggCCUAGGCUu -5'
7230 3' -60.9 NC_001900.1 + 5911 0.66 0.389645
Target:  5'- --aGaACCCGGAcGGCUCGGAgccCCGGAg -3'
miRNA:   3'- uagC-UGGGCCUcUCGGGCCUa--GGCUU- -5'
7230 3' -60.9 NC_001900.1 + 28979 0.66 0.372242
Target:  5'- uGUUGGCCCGGAacucgaaguaGaAGCCgGGAggCCGAc -3'
miRNA:   3'- -UAGCUGGGCCU----------C-UCGGgCCUa-GGCUu -5'
7230 3' -60.9 NC_001900.1 + 9678 0.66 0.347146
Target:  5'- -aCGAgCUGG-GAGaCCCGGAUCCu-- -3'
miRNA:   3'- uaGCUgGGCCuCUC-GGGCCUAGGcuu -5'
7230 3' -60.9 NC_001900.1 + 12633 0.67 0.323284
Target:  5'- -gCGGCCCGGuGAGgCCGuGAUCUa-- -3'
miRNA:   3'- uaGCUGGGCCuCUCgGGC-CUAGGcuu -5'
7230 3' -60.9 NC_001900.1 + 2222 0.67 0.315606
Target:  5'- -gUGGCUgGGAGGGCCUGGAgaUCCu-- -3'
miRNA:   3'- uaGCUGGgCCUCUCGGGCCU--AGGcuu -5'
7230 3' -60.9 NC_001900.1 + 11271 0.67 0.315606
Target:  5'- uUCGACgUGGAGAacugGCCCGGAaaggCCGc- -3'
miRNA:   3'- uAGCUGgGCCUCU----CGGGCCUa---GGCuu -5'
7230 3' -60.9 NC_001900.1 + 12873 0.68 0.293403
Target:  5'- cGUCGuCCCGGAGAgggGUUCGGcugCCGAGg -3'
miRNA:   3'- -UAGCuGGGCCUCU---CGGGCCua-GGCUU- -5'
7230 3' -60.9 NC_001900.1 + 15419 0.68 0.292685
Target:  5'- cGUCGACCCGGAcgccuacgaGGGCgUGGAUgucgccgCCGAu -3'
miRNA:   3'- -UAGCUGGGCCU---------CUCGgGCCUA-------GGCUu -5'
7230 3' -60.9 NC_001900.1 + 25497 0.68 0.272438
Target:  5'- -aCGGCCCGGAG-GUCgUGGAUgCGGAg -3'
miRNA:   3'- uaGCUGGGCCUCuCGG-GCCUAgGCUU- -5'
7230 3' -60.9 NC_001900.1 + 27450 0.69 0.234141
Target:  5'- uUCGACgCGGAucAGCCUGGggCCGAGc -3'
miRNA:   3'- uAGCUGgGCCUc-UCGGGCCuaGGCUU- -5'
7230 3' -60.9 NC_001900.1 + 3258 0.7 0.211199
Target:  5'- uUCGACCUGGAGAugcucuGCCUGGucaCCGGc -3'
miRNA:   3'- uAGCUGGGCCUCU------CGGGCCua-GGCUu -5'
7230 3' -60.9 NC_001900.1 + 28135 0.7 0.205774
Target:  5'- -aCGaACCCGGuGAGCCaGGAgccgCCGAAg -3'
miRNA:   3'- uaGC-UGGGCCuCUCGGgCCUa---GGCUU- -5'
7230 3' -60.9 NC_001900.1 + 7921 1.04 0.000533
Target:  5'- gAUCGACCCGGAGAGCCCGGAUCCGAAg -3'
miRNA:   3'- -UAGCUGGGCCUCUCGGGCCUAGGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.