miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7230 5' -59.5 NC_001900.1 + 48530 0.66 0.468693
Target:  5'- cGGCau-GuUCCA-GGCCGCGAGGUUg -3'
miRNA:   3'- -CUGguuCcAGGUgCCGGCGCUCCAGu -5'
7230 5' -59.5 NC_001900.1 + 41086 0.66 0.468693
Target:  5'- gGGCCAGgccGGUgaccUCGCGGCCGUGGaccuuGGUCu -3'
miRNA:   3'- -CUGGUU---CCA----GGUGCCGGCGCU-----CCAGu -5'
7230 5' -59.5 NC_001900.1 + 41761 0.66 0.458877
Target:  5'- cGACCAAGc-CCAgacCGGCgGCGAGGgCGa -3'
miRNA:   3'- -CUGGUUCcaGGU---GCCGgCGCUCCaGU- -5'
7230 5' -59.5 NC_001900.1 + 22444 0.66 0.458877
Target:  5'- cACCcgAGGGUUCAaagaGGuCCGCGAGGaCAu -3'
miRNA:   3'- cUGG--UUCCAGGUg---CC-GGCGCUCCaGU- -5'
7230 5' -59.5 NC_001900.1 + 4722 0.66 0.455953
Target:  5'- cGACCAcgcgcaguGGGUCCACGacauguGCCGCGcucgcgcuggcaacAGGUa- -3'
miRNA:   3'- -CUGGU--------UCCAGGUGC------CGGCGC--------------UCCAgu -5'
7230 5' -59.5 NC_001900.1 + 19266 0.66 0.430105
Target:  5'- gGACCAcGGUCCugGcuGUCGCGAGa--- -3'
miRNA:   3'- -CUGGUuCCAGGugC--CGGCGCUCcagu -5'
7230 5' -59.5 NC_001900.1 + 44096 0.67 0.393448
Target:  5'- uGACCGGGGUgaaucCCAgGGCCGCaacgccucccgGAGGg-- -3'
miRNA:   3'- -CUGGUUCCA-----GGUgCCGGCG-----------CUCCagu -5'
7230 5' -59.5 NC_001900.1 + 3276 0.67 0.393448
Target:  5'- uGCCu-GGUCaC-CGGCCGCGAcuuccgcuGGUCGa -3'
miRNA:   3'- cUGGuuCCAG-GuGCCGGCGCU--------CCAGU- -5'
7230 5' -59.5 NC_001900.1 + 15805 0.67 0.390782
Target:  5'- gGGCCAgaAGGcCCGCgaagccguggucgaGGCCGUcaagGAGGUCGa -3'
miRNA:   3'- -CUGGU--UCCaGGUG--------------CCGGCG----CUCCAGU- -5'
7230 5' -59.5 NC_001900.1 + 45901 0.67 0.375032
Target:  5'- ----cGGGUCCGCucaagacuucgauGGCCGCGAGGaUCu -3'
miRNA:   3'- cugguUCCAGGUG-------------CCGGCGCUCC-AGu -5'
7230 5' -59.5 NC_001900.1 + 6073 0.68 0.36732
Target:  5'- cGAUUAcauGUCgACGGCCGCGAGGcuUCGc -3'
miRNA:   3'- -CUGGUuc-CAGgUGCCGGCGCUCC--AGU- -5'
7230 5' -59.5 NC_001900.1 + 12292 0.68 0.326491
Target:  5'- aGGCCGAuucucGGUCgACGGCCacgucuGgGAGGUCu -3'
miRNA:   3'- -CUGGUU-----CCAGgUGCCGG------CgCUCCAGu -5'
7230 5' -59.5 NC_001900.1 + 6327 0.7 0.261717
Target:  5'- aGCCGcaccGG-CCACGGCCGCugucaAGGUCAa -3'
miRNA:   3'- cUGGUu---CCaGGUGCCGGCGc----UCCAGU- -5'
7230 5' -59.5 NC_001900.1 + 13005 0.7 0.255204
Target:  5'- uGACCAAcguGGUCagcgGCGGCgGCGAGGg-- -3'
miRNA:   3'- -CUGGUU---CCAGg---UGCCGgCGCUCCagu -5'
7230 5' -59.5 NC_001900.1 + 42473 0.7 0.248193
Target:  5'- aGCCAGGGcuugcucaucgguUCCAgGGCUGCGugugcGGGUCGa -3'
miRNA:   3'- cUGGUUCC-------------AGGUgCCGGCGC-----UCCAGU- -5'
7230 5' -59.5 NC_001900.1 + 40593 0.73 0.168189
Target:  5'- aGCCAGGaGUCCuCGGCCGCGuugaccuGGUUg -3'
miRNA:   3'- cUGGUUC-CAGGuGCCGGCGCu------CCAGu -5'
7230 5' -59.5 NC_001900.1 + 32423 0.75 0.121415
Target:  5'- cGGCCuuGG-CCugGGCCGCGuucAGGUCGg -3'
miRNA:   3'- -CUGGuuCCaGGugCCGGCGC---UCCAGU- -5'
7230 5' -59.5 NC_001900.1 + 19308 0.76 0.102844
Target:  5'- cGGCC-GGGUCUACGGCgGUGGGGcCAa -3'
miRNA:   3'- -CUGGuUCCAGGUGCCGgCGCUCCaGU- -5'
7230 5' -59.5 NC_001900.1 + 7965 0.97 0.002838
Target:  5'- aGACCAAGGUCCACGGCCGC-AGGUCAc -3'
miRNA:   3'- -CUGGUUCCAGGUGCCGGCGcUCCAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.