miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7231 3' -59.6 NC_001900.1 + 9051 0.66 0.434291
Target:  5'- gACgGCUaCGAG-GCCAUGCaCCUGCGAg -3'
miRNA:   3'- -UGgUGAgGCUUgCGGUACG-GGGCGUU- -5'
7231 3' -59.6 NC_001900.1 + 31554 0.66 0.434291
Target:  5'- uGCCACcCCGGuACGCCucccggAUGUCCCGgAc -3'
miRNA:   3'- -UGGUGaGGCU-UGCGG------UACGGGGCgUu -5'
7231 3' -59.6 NC_001900.1 + 40350 0.66 0.434291
Target:  5'- gAUgACUCgGAAC-CCGUGCUCgGCGAg -3'
miRNA:   3'- -UGgUGAGgCUUGcGGUACGGGgCGUU- -5'
7231 3' -59.6 NC_001900.1 + 25992 0.67 0.370305
Target:  5'- gGCUAC-CUGGcuCGCgGUGUCCCGCAGc -3'
miRNA:   3'- -UGGUGaGGCUu-GCGgUACGGGGCGUU- -5'
7231 3' -59.6 NC_001900.1 + 37617 0.67 0.336748
Target:  5'- uACCGCgaCCaGAACGCguUGCCCgCGCu- -3'
miRNA:   3'- -UGGUGa-GG-CUUGCGguACGGG-GCGuu -5'
7231 3' -59.6 NC_001900.1 + 9908 0.68 0.305461
Target:  5'- gACUGCggagCUGAugGgCGUGCCCCaGCGAc -3'
miRNA:   3'- -UGGUGa---GGCUugCgGUACGGGG-CGUU- -5'
7231 3' -59.6 NC_001900.1 + 34086 0.68 0.297996
Target:  5'- gGCCGCUCUGucgaccucAGCgGCCAUcUCCCGCAAg -3'
miRNA:   3'- -UGGUGAGGC--------UUG-CGGUAcGGGGCGUU- -5'
7231 3' -59.6 NC_001900.1 + 9201 0.69 0.269553
Target:  5'- cGCCACggcguaCCGAcCGCCGUGCUCCaCGGg -3'
miRNA:   3'- -UGGUGa-----GGCUuGCGGUACGGGGcGUU- -5'
7231 3' -59.6 NC_001900.1 + 43489 0.71 0.208029
Target:  5'- gGCCAgCUCgGuGCGCCGccUGCUCCGCGu -3'
miRNA:   3'- -UGGU-GAGgCuUGCGGU--ACGGGGCGUu -5'
7231 3' -59.6 NC_001900.1 + 16164 0.72 0.159016
Target:  5'- cACCGCUCCu--CGCaacgagcaGUGCCCCGCGc -3'
miRNA:   3'- -UGGUGAGGcuuGCGg-------UACGGGGCGUu -5'
7231 3' -59.6 NC_001900.1 + 38504 0.73 0.142506
Target:  5'- cUCAcCUUCGGugauCGCCAUGUCCCGCGAg -3'
miRNA:   3'- uGGU-GAGGCUu---GCGGUACGGGGCGUU- -5'
7231 3' -59.6 NC_001900.1 + 7822 1.06 0.000477
Target:  5'- gACCACUCCGAACGCCAUGCCCCGCAAg -3'
miRNA:   3'- -UGGUGAGGCUUGCGGUACGGGGCGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.