miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7233 5' -55.5 NC_001900.1 + 44124 0.66 0.673825
Target:  5'- gCCUCccGGAGGgagucGCCUGAaccCGAGGUCGUa -3'
miRNA:   3'- -GGAG--UCUCU-----UGGACUc--GUUCCGGCGa -5'
7233 5' -55.5 NC_001900.1 + 28129 0.66 0.662734
Target:  5'- gCC-CGGAcGAACCcggUGAGcCAGGaGCCGCc -3'
miRNA:   3'- -GGaGUCU-CUUGG---ACUC-GUUC-CGGCGa -5'
7233 5' -55.5 NC_001900.1 + 29005 0.66 0.651615
Target:  5'- uCCgcCAGAGAucuucaGCCUGGGCAacgcucgucAGGCCa-- -3'
miRNA:   3'- -GGa-GUCUCU------UGGACUCGU---------UCCGGcga -5'
7233 5' -55.5 NC_001900.1 + 47967 0.66 0.62933
Target:  5'- uCCUCGGGuu-CCagGGGCAccGCCGCUa -3'
miRNA:   3'- -GGAGUCUcuuGGa-CUCGUucCGGCGA- -5'
7233 5' -55.5 NC_001900.1 + 8059 0.67 0.618187
Target:  5'- --cCAG-GGGCCUGAcgGCAAGGCCa-- -3'
miRNA:   3'- ggaGUCuCUUGGACU--CGUUCCGGcga -5'
7233 5' -55.5 NC_001900.1 + 33609 0.67 0.573833
Target:  5'- gCC-CAGAGAACCUcuGCAGaucGGCgGCg -3'
miRNA:   3'- -GGaGUCUCUUGGAcuCGUU---CCGgCGa -5'
7233 5' -55.5 NC_001900.1 + 44672 0.67 0.562846
Target:  5'- gCCUCGGcgacagcguGGAAcgcgguccCCUGcGGCAgccAGGCCGCUg -3'
miRNA:   3'- -GGAGUC---------UCUU--------GGAC-UCGU---UCCGGCGA- -5'
7233 5' -55.5 NC_001900.1 + 1368 0.68 0.551915
Target:  5'- aCCUCcGAGAucGCUgcaGAGCGugAGGCUGCc -3'
miRNA:   3'- -GGAGuCUCU--UGGa--CUCGU--UCCGGCGa -5'
7233 5' -55.5 NC_001900.1 + 24388 0.68 0.551915
Target:  5'- gCC-CAcGGGAugucgacgccacGCCUGAGCGuGGCCGUc -3'
miRNA:   3'- -GGaGU-CUCU------------UGGACUCGUuCCGGCGa -5'
7233 5' -55.5 NC_001900.1 + 25186 0.68 0.551915
Target:  5'- aCUCGGGGugcCCUGGcCGAGGuuGCg -3'
miRNA:   3'- gGAGUCUCuu-GGACUcGUUCCggCGa -5'
7233 5' -55.5 NC_001900.1 + 10135 0.69 0.447293
Target:  5'- cCCUCcccAGuACCUGAGUAccGCCGCUg -3'
miRNA:   3'- -GGAGuc-UCuUGGACUCGUucCGGCGA- -5'
7233 5' -55.5 NC_001900.1 + 27554 0.7 0.418071
Target:  5'- gCUCGGGucuuguGGAUCUGGGCugcgauGGCCGCg -3'
miRNA:   3'- gGAGUCU------CUUGGACUCGuu----CCGGCGa -5'
7233 5' -55.5 NC_001900.1 + 48995 0.72 0.329601
Target:  5'- gCUCAcAGcGCCUGGGCGAGG-CGCUc -3'
miRNA:   3'- gGAGUcUCuUGGACUCGUUCCgGCGA- -5'
7233 5' -55.5 NC_001900.1 + 7352 1.1 0.000649
Target:  5'- gCCUCAGAGAACCUGAGCAAGGCCGCUg -3'
miRNA:   3'- -GGAGUCUCUUGGACUCGUUCCGGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.