Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
7234 | 3' | -57.4 | NC_001900.1 | + | 42358 | 0.66 | 0.582368 |
Target: 5'- aGCGgGGUaguugccgaUGGGCUgCCACCgguagaugucaaguACGUCGCg -3' miRNA: 3'- aCGCaCUA---------GCCCGA-GGUGG--------------UGCAGUG- -5' |
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7234 | 3' | -57.4 | NC_001900.1 | + | 10416 | 0.66 | 0.563955 |
Target: 5'- cGCGUGAgCGGGCUCgCAaggaCAUGggcUACu -3' miRNA: 3'- aCGCACUaGCCCGAG-GUg---GUGCa--GUG- -5' |
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7234 | 3' | -57.4 | NC_001900.1 | + | 24595 | 0.66 | 0.553194 |
Target: 5'- gGCgGUGGUggacaaggcaUGGGCUCCGCCACu---- -3' miRNA: 3'- aCG-CACUA----------GCCCGAGGUGGUGcagug -5' |
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7234 | 3' | -57.4 | NC_001900.1 | + | 28027 | 0.66 | 0.531867 |
Target: 5'- gGUGUaacCGGGUgcggagCCGCCAcCGUCACa -3' miRNA: 3'- aCGCAcuaGCCCGa-----GGUGGU-GCAGUG- -5' |
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7234 | 3' | -57.4 | NC_001900.1 | + | 2465 | 0.67 | 0.500463 |
Target: 5'- cUGCGUc--CGGGCUgCCACCgACGUagacCACa -3' miRNA: 3'- -ACGCAcuaGCCCGA-GGUGG-UGCA----GUG- -5' |
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7234 | 3' | -57.4 | NC_001900.1 | + | 34740 | 0.67 | 0.490175 |
Target: 5'- gGCGUGGUCGauCUCCAUCGCaUCGa -3' miRNA: 3'- aCGCACUAGCccGAGGUGGUGcAGUg -5' |
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7234 | 3' | -57.4 | NC_001900.1 | + | 4992 | 0.68 | 0.440325 |
Target: 5'- aUGCuc-GUCGGGCUCCAgCACGgcgGCg -3' miRNA: 3'- -ACGcacUAGCCCGAGGUgGUGCag-UG- -5' |
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7234 | 3' | -57.4 | NC_001900.1 | + | 27599 | 0.69 | 0.384514 |
Target: 5'- aGgGUGAacgccuucaUCGGGCugUCCACCAUGUUc- -3' miRNA: 3'- aCgCACU---------AGCCCG--AGGUGGUGCAGug -5' |
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7234 | 3' | -57.4 | NC_001900.1 | + | 29649 | 0.69 | 0.384514 |
Target: 5'- gGCGaGcUUGcGGCUgUACCGCGUCACu -3' miRNA: 3'- aCGCaCuAGC-CCGAgGUGGUGCAGUG- -5' |
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7234 | 3' | -57.4 | NC_001900.1 | + | 35407 | 0.69 | 0.375678 |
Target: 5'- gGCGgguacuUGAUCGGaGC-CCGCUgaACGUCGCu -3' miRNA: 3'- aCGC------ACUAGCC-CGaGGUGG--UGCAGUG- -5' |
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7234 | 3' | -57.4 | NC_001900.1 | + | 25920 | 0.7 | 0.350004 |
Target: 5'- gGUGUGA--GGGCUU--CCACGUCGCg -3' miRNA: 3'- aCGCACUagCCCGAGguGGUGCAGUG- -5' |
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7234 | 3' | -57.4 | NC_001900.1 | + | 24130 | 0.73 | 0.211263 |
Target: 5'- cGC-UGua-GGGCUCCACCugGUCGa -3' miRNA: 3'- aCGcACuagCCCGAGGUGGugCAGUg -5' |
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7234 | 3' | -57.4 | NC_001900.1 | + | 6979 | 1 | 0.00263 |
Target: 5'- uUGCGUGA-CGGGCUCCACCACGUCACc -3' miRNA: 3'- -ACGCACUaGCCCGAGGUGGUGCAGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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