miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7234 5' -53.4 NC_001900.1 + 1243 0.67 0.751425
Target:  5'- uCggUGGCGGCGGC--AGCGGagCUgGCg -3'
miRNA:   3'- -GuuGCUGCCGCUGuuUCGCUa-GGgCG- -5'
7234 5' -53.4 NC_001900.1 + 24042 0.67 0.740888
Target:  5'- cCAACcuCGGUGcCGAGGCGGcuaUCCCGg -3'
miRNA:   3'- -GUUGcuGCCGCuGUUUCGCU---AGGGCg -5'
7234 5' -53.4 NC_001900.1 + 16665 0.67 0.719488
Target:  5'- --cCGACGcCGACAAGGCcaaggaaGUCCUGCu -3'
miRNA:   3'- guuGCUGCcGCUGUUUCGc------UAGGGCG- -5'
7234 5' -53.4 NC_001900.1 + 31281 0.67 0.719488
Target:  5'- cCAGCGugGGCaGCAucGGCuGAaucgCCUGCa -3'
miRNA:   3'- -GUUGCugCCGcUGUu-UCG-CUa---GGGCG- -5'
7234 5' -53.4 NC_001900.1 + 3122 0.68 0.70865
Target:  5'- aAGCGAUGGagcgcgaaGGCGAGGaccgcgaGAUCCuCGCg -3'
miRNA:   3'- gUUGCUGCCg-------CUGUUUCg------CUAGG-GCG- -5'
7234 5' -53.4 NC_001900.1 + 27021 0.68 0.697734
Target:  5'- gCGACGAUGGCGACc--GUGGcCCUGa -3'
miRNA:   3'- -GUUGCUGCCGCUGuuuCGCUaGGGCg -5'
7234 5' -53.4 NC_001900.1 + 6012 0.68 0.686754
Target:  5'- -cGCGAgcCGGUGACcuccgcgagcuGGAGCGAguugUCCGCg -3'
miRNA:   3'- guUGCU--GCCGCUG-----------UUUCGCUa---GGGCG- -5'
7234 5' -53.4 NC_001900.1 + 42984 0.68 0.686754
Target:  5'- gAGCG-CGuGCGAUgaacucgggGGAGCGAUCCCu- -3'
miRNA:   3'- gUUGCuGC-CGCUG---------UUUCGCUAGGGcg -5'
7234 5' -53.4 NC_001900.1 + 20146 0.68 0.684551
Target:  5'- -cGCGACGGCGACuuccgucugcGCGGcCUCGUc -3'
miRNA:   3'- guUGCUGCCGCUGuuu-------CGCUaGGGCG- -5'
7234 5' -53.4 NC_001900.1 + 42784 0.68 0.680139
Target:  5'- cCAGCGACGaugucgccgauguucGCGGCugcgcccgcGuCGAUCCCGCc -3'
miRNA:   3'- -GUUGCUGC---------------CGCUGuuu------C-GCUAGGGCG- -5'
7234 5' -53.4 NC_001900.1 + 23290 0.68 0.667969
Target:  5'- gGAUGACGGCGagacgaugaagcuccGCGugcgccgGGGCGcggCCCGCg -3'
miRNA:   3'- gUUGCUGCCGC---------------UGU-------UUCGCua-GGGCG- -5'
7234 5' -53.4 NC_001900.1 + 25805 0.68 0.664643
Target:  5'- cCAGCGAugcCGGUGugGuccugugcguccAGGCGAgCCUGCa -3'
miRNA:   3'- -GUUGCU---GCCGCugU------------UUCGCUaGGGCG- -5'
7234 5' -53.4 NC_001900.1 + 45918 0.68 0.664643
Target:  5'- uCGAUGGCcGCGAgGAucucGCGGUCCuCGCc -3'
miRNA:   3'- -GUUGCUGcCGCUgUUu---CGCUAGG-GCG- -5'
7234 5' -53.4 NC_001900.1 + 37256 0.68 0.664643
Target:  5'- uCGugGACGcCGACAGGGCcGUcguacacggCCCGCa -3'
miRNA:   3'- -GUugCUGCcGCUGUUUCGcUA---------GGGCG- -5'
7234 5' -53.4 NC_001900.1 + 20499 0.69 0.642407
Target:  5'- -cACGACGGCGAguGGGCGuggCUgaaGCg -3'
miRNA:   3'- guUGCUGCCGCUguUUCGCua-GGg--CG- -5'
7234 5' -53.4 NC_001900.1 + 13888 0.69 0.635725
Target:  5'- gGGCGGUGGCGuCGGGGCGAacuacucgaaccgauUCCuCGCu -3'
miRNA:   3'- gUUGCUGCCGCuGUUUCGCU---------------AGG-GCG- -5'
7234 5' -53.4 NC_001900.1 + 10396 0.69 0.63127
Target:  5'- --cCGA-GGCuGCcuGGCGAUCCCGUa -3'
miRNA:   3'- guuGCUgCCGcUGuuUCGCUAGGGCG- -5'
7234 5' -53.4 NC_001900.1 + 43330 0.69 0.620133
Target:  5'- cCGGCGuCGGCGGuCAucgagguuGGUGAgCCCGCc -3'
miRNA:   3'- -GUUGCuGCCGCU-GUu-------UCGCUaGGGCG- -5'
7234 5' -53.4 NC_001900.1 + 8871 0.69 0.609007
Target:  5'- gAugGGgGGCGGCAuGGUGGUCgaaaUCGCg -3'
miRNA:   3'- gUugCUgCCGCUGUuUCGCUAG----GGCG- -5'
7234 5' -53.4 NC_001900.1 + 24970 0.69 0.609007
Target:  5'- cUggUGGCGGCGGCGcAGCcgcaacGGUCCCa- -3'
miRNA:   3'- -GuuGCUGCCGCUGUuUCG------CUAGGGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.