miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7235 5' -50.6 NC_001900.1 + 7636 0.66 0.95043
Target:  5'- cCCGgacaucgagcuUCGUUGaccaAgGGGGUUGGGGGCGCa -3'
miRNA:   3'- -GGC-----------AGCAACc---UgCUCUAGCUCUUGCG- -5'
7235 5' -50.6 NC_001900.1 + 629 0.66 0.95043
Target:  5'- aCCGUC--UGGuCGAGccCG-GAGCGCc -3'
miRNA:   3'- -GGCAGcaACCuGCUCuaGCuCUUGCG- -5'
7235 5' -50.6 NC_001900.1 + 15979 0.66 0.95043
Target:  5'- gCCG-CGcUGGACGAGGaaGAGGAUc- -3'
miRNA:   3'- -GGCaGCaACCUGCUCUagCUCUUGcg -5'
7235 5' -50.6 NC_001900.1 + 4737 0.66 0.95043
Target:  5'- gCCGUCGUcgUGGucgACGGGGagcuUCGAGucCGg -3'
miRNA:   3'- -GGCAGCA--ACC---UGCUCU----AGCUCuuGCg -5'
7235 5' -50.6 NC_001900.1 + 10471 0.66 0.945769
Target:  5'- gCGcCGcugGGACGAGGaaGAGGcCGCg -3'
miRNA:   3'- gGCaGCaa-CCUGCUCUagCUCUuGCG- -5'
7235 5' -50.6 NC_001900.1 + 15418 0.66 0.94083
Target:  5'- aCGUCGacccGGACGccuaCGAGGGCGUg -3'
miRNA:   3'- gGCAGCaa--CCUGCucuaGCUCUUGCG- -5'
7235 5' -50.6 NC_001900.1 + 12441 0.66 0.94083
Target:  5'- aCCGUCGUcUGGACaGGGAg-GAGuaccuACGg -3'
miRNA:   3'- -GGCAGCA-ACCUG-CUCUagCUCu----UGCg -5'
7235 5' -50.6 NC_001900.1 + 48590 0.66 0.94083
Target:  5'- cUCGUaCGc-GGAUGAGcUUGGGAACGUc -3'
miRNA:   3'- -GGCA-GCaaCCUGCUCuAGCUCUUGCG- -5'
7235 5' -50.6 NC_001900.1 + 33272 0.66 0.924314
Target:  5'- gCCGUCacccUUGaACGuGAUCGAcAACGCg -3'
miRNA:   3'- -GGCAGc---AACcUGCuCUAGCUcUUGCG- -5'
7235 5' -50.6 NC_001900.1 + 42065 0.67 0.911882
Target:  5'- gCCGUCGUUGuacgggccgguGACGuGGUgGAGcccgaucACGCa -3'
miRNA:   3'- -GGCAGCAAC-----------CUGCuCUAgCUCu------UGCG- -5'
7235 5' -50.6 NC_001900.1 + 37922 0.67 0.905241
Target:  5'- gCGUCaccgUGGAUGAGGcgcugagcuuccUCGAGGAUGg -3'
miRNA:   3'- gGCAGca--ACCUGCUCU------------AGCUCUUGCg -5'
7235 5' -50.6 NC_001900.1 + 19380 0.68 0.883662
Target:  5'- -gGUCG-UGGACGGGuUCGAcAAgGCg -3'
miRNA:   3'- ggCAGCaACCUGCUCuAGCUcUUgCG- -5'
7235 5' -50.6 NC_001900.1 + 32049 0.68 0.883662
Target:  5'- gCgGcCGUUGG-CGAGGUUGAcGAugGUu -3'
miRNA:   3'- -GgCaGCAACCuGCUCUAGCU-CUugCG- -5'
7235 5' -50.6 NC_001900.1 + 21718 0.68 0.867939
Target:  5'- -aGcCGUUGGAgauCGAGAUCG-GAuacCGCg -3'
miRNA:   3'- ggCaGCAACCU---GCUCUAGCuCUu--GCG- -5'
7235 5' -50.6 NC_001900.1 + 14672 0.69 0.833531
Target:  5'- uCCGcCGcaucGGCGGGAUCaGGAACGCc -3'
miRNA:   3'- -GGCaGCaac-CUGCUCUAGcUCUUGCG- -5'
7235 5' -50.6 NC_001900.1 + 6314 0.71 0.733773
Target:  5'- gUGcCGaUGGACGAGGUCcgcGAGAugGUc -3'
miRNA:   3'- gGCaGCaACCUGCUCUAG---CUCUugCG- -5'
7235 5' -50.6 NC_001900.1 + 4182 0.71 0.733773
Target:  5'- cCCaUCGcUGGAUGAGAUCcGAGAGguCGUg -3'
miRNA:   3'- -GGcAGCaACCUGCUCUAG-CUCUU--GCG- -5'
7235 5' -50.6 NC_001900.1 + 25273 0.71 0.723024
Target:  5'- cCCGUCGUcGGACcacaGGGccaGUCGAGAGcCGUu -3'
miRNA:   3'- -GGCAGCAaCCUG----CUC---UAGCUCUU-GCG- -5'
7235 5' -50.6 NC_001900.1 + 6246 0.71 0.701259
Target:  5'- cCUGaUCug-GGGCGGGAUCGAcgcGGGCGCa -3'
miRNA:   3'- -GGC-AGcaaCCUGCUCUAGCU---CUUGCG- -5'
7235 5' -50.6 NC_001900.1 + 4590 0.74 0.546056
Target:  5'- aCCGUCGgccUGGAgcAGGUCGAGAAguucuuCGCg -3'
miRNA:   3'- -GGCAGCa--ACCUgcUCUAGCUCUU------GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.