miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7236 3' -54.4 NC_001900.1 + 30500 0.73 0.326431
Target:  5'- cACCAgcgGuGCCAGCgCACuGCAGAUCCg -3'
miRNA:   3'- cUGGUa--C-UGGUUGgGUGcCGUCUAGG- -5'
7236 3' -54.4 NC_001900.1 + 17666 0.66 0.703113
Target:  5'- cACCAcgcUGGCCGacACCCuCGGCAcGAUgCu -3'
miRNA:   3'- cUGGU---ACUGGU--UGGGuGCCGU-CUAgG- -5'
7236 3' -54.4 NC_001900.1 + 10640 0.66 0.712929
Target:  5'- aGGCCGUGAUCAcugcgggGCUCGCcgGGUAcGUCCa -3'
miRNA:   3'- -CUGGUACUGGU-------UGGGUG--CCGUcUAGG- -5'
7236 3' -54.4 NC_001900.1 + 6375 0.66 0.746177
Target:  5'- uGGCaCGcUGACCAccuCCC-CGGUGGAUCa -3'
miRNA:   3'- -CUG-GU-ACUGGUu--GGGuGCCGUCUAGg -5'
7236 3' -54.4 NC_001900.1 + 13722 0.69 0.537153
Target:  5'- cGCgAUGugCGACCaCGaaGCGGAUCCu -3'
miRNA:   3'- cUGgUACugGUUGG-GUgcCGUCUAGG- -5'
7236 3' -54.4 NC_001900.1 + 5529 0.68 0.580953
Target:  5'- uACCggGACUucucccggugGGCUCACGGCAGGggCCu -3'
miRNA:   3'- cUGGuaCUGG----------UUGGGUGCCGUCUa-GG- -5'
7236 3' -54.4 NC_001900.1 + 8575 0.68 0.624328
Target:  5'- gGACCggGGCCAgaagaucACCCuCGGguucgaCGGGUCCa -3'
miRNA:   3'- -CUGGuaCUGGU-------UGGGuGCC------GUCUAGG- -5'
7236 3' -54.4 NC_001900.1 + 6516 0.68 0.625444
Target:  5'- cGGCCcgcUGGCCAGCCagauccucaACGGCA--UCCa -3'
miRNA:   3'- -CUGGu--ACUGGUUGGg--------UGCCGUcuAGG- -5'
7236 3' -54.4 NC_001900.1 + 20913 0.67 0.647764
Target:  5'- cACCGaGACC-GCCUuCGGCGGcUCCu -3'
miRNA:   3'- cUGGUaCUGGuUGGGuGCCGUCuAGG- -5'
7236 3' -54.4 NC_001900.1 + 27031 0.66 0.702019
Target:  5'- cGACCGUGGCCcugagccGACacgguugguacgCCugGGCGcugcuGAUCCu -3'
miRNA:   3'- -CUGGUACUGG-------UUG------------GGugCCGU-----CUAGG- -5'
7236 3' -54.4 NC_001900.1 + 16655 0.67 0.681107
Target:  5'- aGGCCAaGGCCGACUUcaaGCGGCugauGAUgCa -3'
miRNA:   3'- -CUGGUaCUGGUUGGG---UGCCGu---CUAgG- -5'
7236 3' -54.4 NC_001900.1 + 30702 0.67 0.646649
Target:  5'- aGCgaGUGGCCgAACCCAcCGGCcccgaaaggccggGGGUCCa -3'
miRNA:   3'- cUGg-UACUGG-UUGGGU-GCCG-------------UCUAGG- -5'
7236 3' -54.4 NC_001900.1 + 9539 0.72 0.377539
Target:  5'- uGACCcccaGAUCGACCUugGGUGGgAUCCg -3'
miRNA:   3'- -CUGGua--CUGGUUGGGugCCGUC-UAGG- -5'
7236 3' -54.4 NC_001900.1 + 15399 0.67 0.692139
Target:  5'- cGCCuUGGCCAccacGCCCACaaGGcCGGuGUCCg -3'
miRNA:   3'- cUGGuACUGGU----UGGGUG--CC-GUC-UAGG- -5'
7236 3' -54.4 NC_001900.1 + 31749 0.71 0.423091
Target:  5'- uGACCgcaGUGACCAACCgaccguuCGCGGCggucAGGUCUu -3'
miRNA:   3'- -CUGG---UACUGGUUGG-------GUGCCG----UCUAGG- -5'
7236 3' -54.4 NC_001900.1 + 5931 0.68 0.636606
Target:  5'- -cCCcgGAgCAACCUcUGGCAGcUCCa -3'
miRNA:   3'- cuGGuaCUgGUUGGGuGCCGUCuAGG- -5'
7236 3' -54.4 NC_001900.1 + 24907 0.67 0.692139
Target:  5'- uACCGaGACCgGACCUacgACGGCGGcgCUa -3'
miRNA:   3'- cUGGUaCUGG-UUGGG---UGCCGUCuaGG- -5'
7236 3' -54.4 NC_001900.1 + 48581 0.66 0.703113
Target:  5'- aGGCCA-GACgCAACCCacuaGCGGCcGGUagCCg -3'
miRNA:   3'- -CUGGUaCUG-GUUGGG----UGCCGuCUA--GG- -5'
7236 3' -54.4 NC_001900.1 + 26112 0.7 0.494552
Target:  5'- cGACCGggGugUcGCCCAacaccgGGUAGAUCCg -3'
miRNA:   3'- -CUGGUa-CugGuUGGGUg-----CCGUCUAGG- -5'
7236 3' -54.4 NC_001900.1 + 37271 0.68 0.580953
Target:  5'- gGGCCGUcGuACaCGGCCCGCaGCGGggCCa -3'
miRNA:   3'- -CUGGUA-C-UG-GUUGGGUGcCGUCuaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.