miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7236 5' -59.9 NC_001900.1 + 24730 0.66 0.461776
Target:  5'- gCUGGugGUaccGCAgGGCCUGGUuaCa -3'
miRNA:   3'- -GACCugCGgacCGUgCUGGACCAcgG- -5'
7236 5' -59.9 NC_001900.1 + 38411 0.66 0.446321
Target:  5'- gCUGGACGUacccGGCgAgccccgcagugaucaCGGCCUGG-GCCg -3'
miRNA:   3'- -GACCUGCGga--CCG-U---------------GCUGGACCaCGG- -5'
7236 5' -59.9 NC_001900.1 + 48165 0.66 0.433038
Target:  5'- -cGGaaaaGCGCCUGGU-CGACCUucgaggagcGGaUGCCc -3'
miRNA:   3'- gaCC----UGCGGACCGuGCUGGA---------CC-ACGG- -5'
7236 5' -59.9 NC_001900.1 + 18583 0.66 0.423693
Target:  5'- gCUGG-UGCCcgacgUGaGC-CGGCCguUGGUGCCg -3'
miRNA:   3'- -GACCuGCGG-----AC-CGuGCUGG--ACCACGG- -5'
7236 5' -59.9 NC_001900.1 + 13204 0.66 0.414469
Target:  5'- -gGGAUGCCUGGCuCGgagauguaccgaGCCgaGGUGUUc -3'
miRNA:   3'- gaCCUGCGGACCGuGC------------UGGa-CCACGG- -5'
7236 5' -59.9 NC_001900.1 + 24464 0.67 0.396398
Target:  5'- -aGGucaGCCUcGGCaACGACCaGGUGUg -3'
miRNA:   3'- gaCCug-CGGA-CCG-UGCUGGaCCACGg -5'
7236 5' -59.9 NC_001900.1 + 42178 0.67 0.396397
Target:  5'- gUGGA-GCCUgcccgucggaGGCAgGAUgUGGUGCUu -3'
miRNA:   3'- gACCUgCGGA----------CCGUgCUGgACCACGG- -5'
7236 5' -59.9 NC_001900.1 + 7905 0.67 0.396397
Target:  5'- uCUGGACGCacaaGGCGauCGACCcGGagaGCCc -3'
miRNA:   3'- -GACCUGCGga--CCGU--GCUGGaCCa--CGG- -5'
7236 5' -59.9 NC_001900.1 + 28794 0.67 0.395508
Target:  5'- -aGGGCcucgaacaCCUGGUccACGACCUGGUugacgugGCCc -3'
miRNA:   3'- gaCCUGc-------GGACCG--UGCUGGACCA-------CGG- -5'
7236 5' -59.9 NC_001900.1 + 8945 0.67 0.387554
Target:  5'- -gGcGAgGUCUGGCACGAcggcaaCCcGGUGCUu -3'
miRNA:   3'- gaC-CUgCGGACCGUGCU------GGaCCACGG- -5'
7236 5' -59.9 NC_001900.1 + 38075 0.67 0.385801
Target:  5'- -aGGACGCCUucaGUACGuCCUGGacguacgucuugGCCu -3'
miRNA:   3'- gaCCUGCGGAc--CGUGCuGGACCa-----------CGG- -5'
7236 5' -59.9 NC_001900.1 + 4355 0.68 0.337288
Target:  5'- -gGuGugGCagcGGCcaGCGGCCUGGcUGCCg -3'
miRNA:   3'- gaC-CugCGga-CCG--UGCUGGACC-ACGG- -5'
7236 5' -59.9 NC_001900.1 + 18243 0.68 0.321621
Target:  5'- -aGaACGCCUcGUACGACCUccaGGUGCUc -3'
miRNA:   3'- gaCcUGCGGAcCGUGCUGGA---CCACGG- -5'
7236 5' -59.9 NC_001900.1 + 37258 0.68 0.321621
Target:  5'- gUGGACGCCgacagGGCcgucguacACGGCCcgcagcgGG-GCCa -3'
miRNA:   3'- gACCUGCGGa----CCG--------UGCUGGa------CCaCGG- -5'
7236 5' -59.9 NC_001900.1 + 35690 0.68 0.321621
Target:  5'- uUGGucucguCGCgCUGGacgAUGACCuUGGUGCCc -3'
miRNA:   3'- gACCu-----GCG-GACCg--UGCUGG-ACCACGG- -5'
7236 5' -59.9 NC_001900.1 + 15861 0.69 0.284861
Target:  5'- -cGGAgGCuCUGGU-CGACCUGG-GCg -3'
miRNA:   3'- gaCCUgCG-GACCGuGCUGGACCaCGg -5'
7236 5' -59.9 NC_001900.1 + 2634 0.69 0.284861
Target:  5'- cCUGGGCGUCguuaaGCG-GGCCaGGUGCCu -3'
miRNA:   3'- -GACCUGCGGac---CGUgCUGGaCCACGG- -5'
7236 5' -59.9 NC_001900.1 + 32689 0.69 0.271113
Target:  5'- -gGGACGCg-GGUAUG-CCUugGGUGCCu -3'
miRNA:   3'- gaCCUGCGgaCCGUGCuGGA--CCACGG- -5'
7236 5' -59.9 NC_001900.1 + 14187 0.69 0.27044
Target:  5'- gCUGaaGACGUUcggcGGCACGGCCUcugggccGGUGCCu -3'
miRNA:   3'- -GAC--CUGCGGa---CCGUGCUGGA-------CCACGG- -5'
7236 5' -59.9 NC_001900.1 + 11234 0.7 0.245227
Target:  5'- gUGGcACGCagGGUGCGACUgccuggUGGUGCCu -3'
miRNA:   3'- gACC-UGCGgaCCGUGCUGG------ACCACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.