miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7237 5' -52.6 NC_001900.1 + 37183 0.66 0.868753
Target:  5'- gUUCUUCuUCGCGGacUCGGC--GAUCGa -3'
miRNA:   3'- gGAGAAGuAGCGCC--AGCUGguCUAGC- -5'
7237 5' -52.6 NC_001900.1 + 34698 0.66 0.860577
Target:  5'- -gUCcaCAUCGCcGUCGACCucuucGAUCGa -3'
miRNA:   3'- ggAGaaGUAGCGcCAGCUGGu----CUAGC- -5'
7237 5' -52.6 NC_001900.1 + 27941 0.66 0.852157
Target:  5'- aCUCUcccaGUC-CGGUCGACUcaucagaagaAGAUCGg -3'
miRNA:   3'- gGAGAag--UAGcGCCAGCUGG----------UCUAGC- -5'
7237 5' -52.6 NC_001900.1 + 28219 0.66 0.852157
Target:  5'- gCCUCgUCcUUGCGGaCGGCCucGUCGg -3'
miRNA:   3'- -GGAGaAGuAGCGCCaGCUGGucUAGC- -5'
7237 5' -52.6 NC_001900.1 + 48711 0.66 0.846991
Target:  5'- gCCgcgCUUCAggCGCGG-CGcuagauccggcgguuGCCGGAUCa -3'
miRNA:   3'- -GGa--GAAGUa-GCGCCaGC---------------UGGUCUAGc -5'
7237 5' -52.6 NC_001900.1 + 36275 0.67 0.804789
Target:  5'- --cCUUCAUCGCcagcggcaggauGUCGACCAGGUa- -3'
miRNA:   3'- ggaGAAGUAGCGc-----------CAGCUGGUCUAgc -5'
7237 5' -52.6 NC_001900.1 + 26250 0.67 0.797022
Target:  5'- cCUUCUUC-UCGCGcUCGGCCggcgGGGUCc -3'
miRNA:   3'- -GGAGAAGuAGCGCcAGCUGG----UCUAGc -5'
7237 5' -52.6 NC_001900.1 + 18025 0.68 0.777127
Target:  5'- gCCgg-UCAUCGUgccGGUgGuCCAGAUCGu -3'
miRNA:   3'- -GGagaAGUAGCG---CCAgCuGGUCUAGC- -5'
7237 5' -52.6 NC_001900.1 + 34894 0.68 0.777127
Target:  5'- aCCUCUUgAUCGUGuaGUCGACCcGcgCc -3'
miRNA:   3'- -GGAGAAgUAGCGC--CAGCUGGuCuaGc -5'
7237 5' -52.6 NC_001900.1 + 43364 0.68 0.756619
Target:  5'- aCUCUUCgAUC-UGGUCGACCgcgaugaagAGGUCa -3'
miRNA:   3'- gGAGAAG-UAGcGCCAGCUGG---------UCUAGc -5'
7237 5' -52.6 NC_001900.1 + 35631 0.69 0.714143
Target:  5'- aCCgcgUCGgccUCGauGUCGAUCAGAUCGg -3'
miRNA:   3'- -GGagaAGU---AGCgcCAGCUGGUCUAGC- -5'
7237 5' -52.6 NC_001900.1 + 3676 0.69 0.714143
Target:  5'- aCUUCUUCGaUGCGuUCGACCAGcuccUCGg -3'
miRNA:   3'- -GGAGAAGUaGCGCcAGCUGGUCu---AGC- -5'
7237 5' -52.6 NC_001900.1 + 33189 0.69 0.703288
Target:  5'- aCCUCgucgggaUCAaCGCccaGGUCGACCAGAg-- -3'
miRNA:   3'- -GGAGa------AGUaGCG---CCAGCUGGUCUagc -5'
7237 5' -52.6 NC_001900.1 + 3787 0.69 0.692362
Target:  5'- gCgUCgUCAccuUCGCGGUCGGCguGAccUCGa -3'
miRNA:   3'- -GgAGaAGU---AGCGCCAGCUGguCU--AGC- -5'
7237 5' -52.6 NC_001900.1 + 30583 0.7 0.625956
Target:  5'- ------gGUCGaUGGUCGACCAGAUCu -3'
miRNA:   3'- ggagaagUAGC-GCCAGCUGGUCUAGc -5'
7237 5' -52.6 NC_001900.1 + 33387 0.71 0.570658
Target:  5'- gCUUCUUCAgcaggaGCGGugUCGACCGGcgCGc -3'
miRNA:   3'- -GGAGAAGUag----CGCC--AGCUGGUCuaGC- -5'
7237 5' -52.6 NC_001900.1 + 6841 0.72 0.506048
Target:  5'- aCUCgcagggagcCAUCGUGGUUGGCCAGGUg- -3'
miRNA:   3'- gGAGaa-------GUAGCGCCAGCUGGUCUAgc -5'
7237 5' -52.6 NC_001900.1 + 4737 0.73 0.49557
Target:  5'- gCCg--UCGUCGUGGUCGACgGGGagcuUCGa -3'
miRNA:   3'- -GGagaAGUAGCGCCAGCUGgUCU----AGC- -5'
7237 5' -52.6 NC_001900.1 + 38110 0.73 0.474917
Target:  5'- gCCUCggCGUUGCgcgucaGGUCGACCAcGUCGu -3'
miRNA:   3'- -GGAGaaGUAGCG------CCAGCUGGUcUAGC- -5'
7237 5' -52.6 NC_001900.1 + 5693 1.12 0.001238
Target:  5'- aCCUCUUCAUCGCGGUCGACCAGAUCGa -3'
miRNA:   3'- -GGAGAAGUAGCGCCAGCUGGUCUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.