Results 21 - 24 of 24 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7238 | 5' | -63.6 | NC_001900.1 | + | 41900 | 0.72 | 0.101458 |
Target: 5'- cCGGC-CACCGAugaagcGCUGGCCuucaucacgauccGGCCGAUg -3' miRNA: 3'- -GCCGcGUGGCU------CGACCGG-------------CCGGCUAg -5' |
|||||||
7238 | 5' | -63.6 | NC_001900.1 | + | 18153 | 0.73 | 0.086397 |
Target: 5'- uCGGCGCagucGCCGAGUgGGUCGGCUccuGGUCc -3' miRNA: 3'- -GCCGCG----UGGCUCGaCCGGCCGG---CUAG- -5' |
|||||||
7238 | 5' | -63.6 | NC_001900.1 | + | 45667 | 0.76 | 0.054032 |
Target: 5'- aCGGCGCACac-GCUcacGGCCGGCCGGccUCa -3' miRNA: 3'- -GCCGCGUGgcuCGA---CCGGCCGGCU--AG- -5' |
|||||||
7238 | 5' | -63.6 | NC_001900.1 | + | 5582 | 1.08 | 0.000176 |
Target: 5'- gCGGCGCACCGAGCUGGCCGGCCGAUCc -3' miRNA: 3'- -GCCGCGUGGCUCGACCGGCCGGCUAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home