miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7239 5' -63.6 NC_001900.1 + 25661 0.66 0.297402
Target:  5'- gUGGCuccCUGGUCGGUCCacucGGCCUgauggccguccuugaUCGCGu -3'
miRNA:   3'- -ACCGu--GGUCAGCCGGG----UCGGG---------------AGCGC- -5'
7239 5' -63.6 NC_001900.1 + 46354 0.66 0.29386
Target:  5'- -cGCGCCAGUCGucgcgaaGCCUcuGGCCgCUgGCGu -3'
miRNA:   3'- acCGUGGUCAGC-------CGGG--UCGG-GAgCGC- -5'
7239 5' -63.6 NC_001900.1 + 23114 0.66 0.287567
Target:  5'- gUGGaACCacuucuGGUCGGCCCugaccgggcgcAGCCCggGCGa -3'
miRNA:   3'- -ACCgUGG------UCAGCCGGG-----------UCGGGagCGC- -5'
7239 5' -63.6 NC_001900.1 + 38684 0.66 0.287567
Target:  5'- cUGGCcguuGCCAuagagcuucguGgCGGCgUCAGCCUUCGCGg -3'
miRNA:   3'- -ACCG----UGGU-----------CaGCCG-GGUCGGGAGCGC- -5'
7239 5' -63.6 NC_001900.1 + 45921 0.66 0.2807
Target:  5'- aUGGcCGCgAGgaucucgCGGUCCucGCCUUCGCGc -3'
miRNA:   3'- -ACC-GUGgUCa------GCCGGGu-CGGGAGCGC- -5'
7239 5' -63.6 NC_001900.1 + 25205 0.66 0.2807
Target:  5'- aGGUugCGGUUacgGGCCUGGCCUUCcCa -3'
miRNA:   3'- aCCGugGUCAG---CCGGGUCGGGAGcGc -5'
7239 5' -63.6 NC_001900.1 + 3551 0.66 0.273964
Target:  5'- cGGgGCCGGUaaCGGCCUGGUgcauccggUCUCGCu -3'
miRNA:   3'- aCCgUGGUCA--GCCGGGUCG--------GGAGCGc -5'
7239 5' -63.6 NC_001900.1 + 4358 0.66 0.260881
Target:  5'- gUGGCagcgGCCAG-CGGCCUGGCUgcCGCa -3'
miRNA:   3'- -ACCG----UGGUCaGCCGGGUCGGgaGCGc -5'
7239 5' -63.6 NC_001900.1 + 34863 0.67 0.250784
Target:  5'- aGGCACCGGcccagaGGCCguGCCgccgaacgucuucagCUUGCGa -3'
miRNA:   3'- aCCGUGGUCag----CCGGguCGG---------------GAGCGC- -5'
7239 5' -63.6 NC_001900.1 + 25032 0.67 0.248311
Target:  5'- cGGCACCgaGGUUGGCgCGGgCUUCGg- -3'
miRNA:   3'- aCCGUGG--UCAGCCGgGUCgGGAGCgc -5'
7239 5' -63.6 NC_001900.1 + 11629 0.67 0.245858
Target:  5'- aGGCugUGGUCGGguucaucggcgacaCCCAGCCCgacgaggUCGUc -3'
miRNA:   3'- aCCGugGUCAGCC--------------GGGUCGGG-------AGCGc -5'
7239 5' -63.6 NC_001900.1 + 24013 0.67 0.236247
Target:  5'- aGGUgcuACCAGcgCGGCCgaAGCCCgCGCc -3'
miRNA:   3'- aCCG---UGGUCa-GCCGGg-UCGGGaGCGc -5'
7239 5' -63.6 NC_001900.1 + 9069 0.67 0.224678
Target:  5'- -cGCugCAGUCuGCgCuGUCCUCGCGu -3'
miRNA:   3'- acCGugGUCAGcCGgGuCGGGAGCGC- -5'
7239 5' -63.6 NC_001900.1 + 48726 0.68 0.215772
Target:  5'- cGGCGCUAGauccggCGGuugccggaucaauucCCCGGCCCUUGUu -3'
miRNA:   3'- aCCGUGGUCa-----GCC---------------GGGUCGGGAGCGc -5'
7239 5' -63.6 NC_001900.1 + 10678 0.68 0.213593
Target:  5'- cGGUucGCCAGUCucuucauccGCCCAGCUCucuccaUCGCGg -3'
miRNA:   3'- aCCG--UGGUCAGc--------CGGGUCGGG------AGCGC- -5'
7239 5' -63.6 NC_001900.1 + 43772 0.68 0.197849
Target:  5'- aGGCGaugaugacuucCCGGUCGGgCC-GCuCCUCGCu -3'
miRNA:   3'- aCCGU-----------GGUCAGCCgGGuCG-GGAGCGc -5'
7239 5' -63.6 NC_001900.1 + 23814 0.69 0.178439
Target:  5'- gGGCuCCGGUCGGCUauCGGCgCUgGCu -3'
miRNA:   3'- aCCGuGGUCAGCCGG--GUCGgGAgCGc -5'
7239 5' -63.6 NC_001900.1 + 36018 0.69 0.163288
Target:  5'- cGGCccccucCCGGUggaugucaaguuaGGCUCAGCCCUCGCc -3'
miRNA:   3'- aCCGu-----GGUCAg------------CCGGGUCGGGAGCGc -5'
7239 5' -63.6 NC_001900.1 + 17448 0.7 0.148517
Target:  5'- uUGGCuCCGGUCGGCCCgaaccGGCCgaacCGCc -3'
miRNA:   3'- -ACCGuGGUCAGCCGGG-----UCGGga--GCGc -5'
7239 5' -63.6 NC_001900.1 + 42770 0.73 0.093988
Target:  5'- cGGCACCAgGUCGugccaggcGUCCAGCCCgaCGUGg -3'
miRNA:   3'- aCCGUGGU-CAGC--------CGGGUCGGGa-GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.