miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7240 3' -58.7 NC_001900.1 + 4237 1.1 0.000388
Target:  5'- aCCGGCAACGGCGAAAUGGCCGCGCCGu -3'
miRNA:   3'- -GGCCGUUGCCGCUUUACCGGCGCGGC- -5'
7240 3' -58.7 NC_001900.1 + 13020 0.76 0.121413
Target:  5'- gCGGCGGCGGCGAg--GGCUGaGCCu -3'
miRNA:   3'- gGCCGUUGCCGCUuuaCCGGCgCGGc -5'
7240 3' -58.7 NC_001900.1 + 41778 0.76 0.128224
Target:  5'- gCGGCGAgGGCGA--UGGCUGCGgUGg -3'
miRNA:   3'- gGCCGUUgCCGCUuuACCGGCGCgGC- -5'
7240 3' -58.7 NC_001900.1 + 5971 0.76 0.131761
Target:  5'- aCGGCGACGGCaugg-GGCCGC-CCGc -3'
miRNA:   3'- gGCCGUUGCCGcuuuaCCGGCGcGGC- -5'
7240 3' -58.7 NC_001900.1 + 40306 0.75 0.146824
Target:  5'- gUCGGCAgugagccgcuGCGGCcgugguUGGCCGCGUCGa -3'
miRNA:   3'- -GGCCGU----------UGCCGcuuu--ACCGGCGCGGC- -5'
7240 3' -58.7 NC_001900.1 + 3032 0.73 0.190038
Target:  5'- aCCGGCGACGGguccgccuggagauCGAGcgGGCaCcCGCCGa -3'
miRNA:   3'- -GGCCGUUGCC--------------GCUUuaCCG-GcGCGGC- -5'
7240 3' -58.7 NC_001900.1 + 16010 0.73 0.196615
Target:  5'- gCGGUAGCGGCGGcGGUGGCCaGCaGCa- -3'
miRNA:   3'- gGCCGUUGCCGCU-UUACCGG-CG-CGgc -5'
7240 3' -58.7 NC_001900.1 + 43329 0.73 0.207121
Target:  5'- aCCGGCGuCGGCGGucaucgagguuGGUGaGCC-CGCCGu -3'
miRNA:   3'- -GGCCGUuGCCGCU-----------UUAC-CGGcGCGGC- -5'
7240 3' -58.7 NC_001900.1 + 33661 0.73 0.207121
Target:  5'- aCCGGCcuuGugGGCGugGUGGCCaagGCGCa- -3'
miRNA:   3'- -GGCCG---UugCCGCuuUACCGG---CGCGgc -5'
7240 3' -58.7 NC_001900.1 + 42742 0.72 0.223786
Target:  5'- gCGGCcgUGGcCGGugcGGCUGCGCCGa -3'
miRNA:   3'- gGCCGuuGCC-GCUuuaCCGGCGCGGC- -5'
7240 3' -58.7 NC_001900.1 + 32176 0.72 0.247765
Target:  5'- gCGGCGAUGGCGAcgaucCCGaCGCCGa -3'
miRNA:   3'- gGCCGUUGCCGCUuuaccGGC-GCGGC- -5'
7240 3' -58.7 NC_001900.1 + 5713 0.71 0.253445
Target:  5'- gCCGGauCAACGGCGGgcucaccaaccucGAUGaccGCCGaCGCCGg -3'
miRNA:   3'- -GGCC--GUUGCCGCU-------------UUAC---CGGC-GCGGC- -5'
7240 3' -58.7 NC_001900.1 + 34863 0.71 0.254083
Target:  5'- -aGGCAcCGGCccAGaGGCCGUGCCGc -3'
miRNA:   3'- ggCCGUuGCCGcuUUaCCGGCGCGGC- -5'
7240 3' -58.7 NC_001900.1 + 7287 0.71 0.267114
Target:  5'- cCCGcucucGUAugGGCGAcaAGUGGCCGCaCCu -3'
miRNA:   3'- -GGC-----CGUugCCGCU--UUACCGGCGcGGc -5'
7240 3' -58.7 NC_001900.1 + 338 0.71 0.267114
Target:  5'- uCCGGCAACcGcCGGAucuaGcGCCGCGCCu -3'
miRNA:   3'- -GGCCGUUGcC-GCUUua--C-CGGCGCGGc -5'
7240 3' -58.7 NC_001900.1 + 44703 0.71 0.287668
Target:  5'- gCGGCAGCcaGGCcgc-UGGCCGCuGCCa -3'
miRNA:   3'- gGCCGUUG--CCGcuuuACCGGCG-CGGc -5'
7240 3' -58.7 NC_001900.1 + 25030 0.7 0.29479
Target:  5'- cUCGGCAccgagguUGGCGcgGgcuucGGCCGCGCUGg -3'
miRNA:   3'- -GGCCGUu------GCCGCuuUa----CCGGCGCGGC- -5'
7240 3' -58.7 NC_001900.1 + 42558 0.7 0.302049
Target:  5'- gCUGGcCAGCGGgcCGAGcugggGGaCCGCGCCGu -3'
miRNA:   3'- -GGCC-GUUGCC--GCUUua---CC-GGCGCGGC- -5'
7240 3' -58.7 NC_001900.1 + 39795 0.7 0.302049
Target:  5'- -aGGCGuUGGUGAucuUGGCCGUGCUc -3'
miRNA:   3'- ggCCGUuGCCGCUuu-ACCGGCGCGGc -5'
7240 3' -58.7 NC_001900.1 + 3912 0.7 0.324648
Target:  5'- aUCGaGUucguCGGCGAGcUGGCCGagaCGCCGg -3'
miRNA:   3'- -GGC-CGuu--GCCGCUUuACCGGC---GCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.