miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7240 3' -58.7 NC_001900.1 + 24090 0.67 0.485144
Target:  5'- aCUGGC-GCGGCGAcaagacGUGGCaGcCGCUGa -3'
miRNA:   3'- -GGCCGuUGCCGCUu-----UACCGgC-GCGGC- -5'
7240 3' -58.7 NC_001900.1 + 24063 0.67 0.482155
Target:  5'- aCCGGCcaaacCGGUGAuacccacugggaccGuugcGGCUGCGCCGc -3'
miRNA:   3'- -GGCCGuu---GCCGCU--------------Uua--CCGGCGCGGC- -5'
7240 3' -58.7 NC_001900.1 + 18123 0.67 0.475215
Target:  5'- cCCGGCugguUGGCGuccUGGCagacuGCGUCGg -3'
miRNA:   3'- -GGCCGuu--GCCGCuuuACCGg----CGCGGC- -5'
7240 3' -58.7 NC_001900.1 + 32015 0.67 0.475215
Target:  5'- -aGGaGACGGCGGucuUGGCCGCuuCCa -3'
miRNA:   3'- ggCCgUUGCCGCUuu-ACCGGCGc-GGc -5'
7240 3' -58.7 NC_001900.1 + 10718 0.67 0.475215
Target:  5'- cCCGGUAugGaguucGCGAAgucgGUGGCCaagacGCuGCCGa -3'
miRNA:   3'- -GGCCGUugC-----CGCUU----UACCGG-----CG-CGGC- -5'
7240 3' -58.7 NC_001900.1 + 16764 0.67 0.465389
Target:  5'- cCCGGaagaaGGCGcGUGAAGcGGCuCGgGCCGu -3'
miRNA:   3'- -GGCCg----UUGC-CGCUUUaCCG-GCgCGGC- -5'
7240 3' -58.7 NC_001900.1 + 27491 0.67 0.455669
Target:  5'- gCCGGCcguCGGCGAuGUaGCgGCGCa- -3'
miRNA:   3'- -GGCCGuu-GCCGCUuUAcCGgCGCGgc -5'
7240 3' -58.7 NC_001900.1 + 23822 0.67 0.436565
Target:  5'- gUCGGCuauCGGCGc--UGGCUuccgGCGCUGg -3'
miRNA:   3'- -GGCCGuu-GCCGCuuuACCGG----CGCGGC- -5'
7240 3' -58.7 NC_001900.1 + 14197 0.68 0.427188
Target:  5'- uUCGGCGgcACGGCcucugGGCCGgUGCCu -3'
miRNA:   3'- -GGCCGU--UGCCGcuuuaCCGGC-GCGGc -5'
7240 3' -58.7 NC_001900.1 + 39276 0.68 0.427188
Target:  5'- uCCGGUucggaAGCGG-GAccaccgGGaCCGCGCCGa -3'
miRNA:   3'- -GGCCG-----UUGCCgCUuua---CC-GGCGCGGC- -5'
7240 3' -58.7 NC_001900.1 + 43843 0.68 0.414262
Target:  5'- gUCGGgAACGGCcagcgcgagGGCUGgGCCGa -3'
miRNA:   3'- -GGCCgUUGCCGcuuua----CCGGCgCGGC- -5'
7240 3' -58.7 NC_001900.1 + 31488 0.68 0.408796
Target:  5'- cCCGGaCggUGcGCGAGAUGGUgGCgggguucacGCCGu -3'
miRNA:   3'- -GGCC-GuuGC-CGCUUUACCGgCG---------CGGC- -5'
7240 3' -58.7 NC_001900.1 + 23313 0.68 0.408796
Target:  5'- aCGGCGGuCGGCccc--GGCUGgGCCGa -3'
miRNA:   3'- gGCCGUU-GCCGcuuuaCCGGCgCGGC- -5'
7240 3' -58.7 NC_001900.1 + 1172 0.68 0.390907
Target:  5'- -aGGCGGCGGUGGA---GCCGCcggaagcgGCCGg -3'
miRNA:   3'- ggCCGUUGCCGCUUuacCGGCG--------CGGC- -5'
7240 3' -58.7 NC_001900.1 + 1249 0.68 0.382157
Target:  5'- gCGGCGGCaGCGGAGcUGGCgGCGgguUCGg -3'
miRNA:   3'- gGCCGUUGcCGCUUU-ACCGgCGC---GGC- -5'
7240 3' -58.7 NC_001900.1 + 21059 0.68 0.382157
Target:  5'- aCCGGCccgAACGGCGuGAUcuucGuGCC-CGCCGg -3'
miRNA:   3'- -GGCCG---UUGCCGCuUUA----C-CGGcGCGGC- -5'
7240 3' -58.7 NC_001900.1 + 26289 0.69 0.373538
Target:  5'- aCCGGUAGCGGUGucgaa--CGCGCCu -3'
miRNA:   3'- -GGCCGUUGCCGCuuuaccgGCGCGGc -5'
7240 3' -58.7 NC_001900.1 + 15813 0.69 0.373538
Target:  5'- aCGGCAGCuacuccGCGccGUGGCUGgUGCCGa -3'
miRNA:   3'- gGCCGUUGc-----CGCuuUACCGGC-GCGGC- -5'
7240 3' -58.7 NC_001900.1 + 17008 0.69 0.372683
Target:  5'- aCGGCAucaaGGCGGcagccgagaccauGAUGcCCGCGCUGg -3'
miRNA:   3'- gGCCGUug--CCGCU-------------UUACcGGCGCGGC- -5'
7240 3' -58.7 NC_001900.1 + 44072 0.69 0.365051
Target:  5'- uCCGGCAACGGguCGAAcaucgaGGCUGCgauGCCu -3'
miRNA:   3'- -GGCCGUUGCC--GCUUua----CCGGCG---CGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.