miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7240 5' -56.1 NC_001900.1 + 11627 0.66 0.589408
Target:  5'- cGUCAaggAGCUUcgccaggaggCCGCUGCuGCUCGGg--- -3'
miRNA:   3'- -UAGU---UCGAA----------GGCGACG-CGAGCCacuc -5'
7240 5' -56.1 NC_001900.1 + 15778 0.67 0.556178
Target:  5'- cGUCGAGCUgaagCCGCUGCugaaGCUgGGccAGa -3'
miRNA:   3'- -UAGUUCGAa---GGCGACG----CGAgCCacUC- -5'
7240 5' -56.1 NC_001900.1 + 43130 0.67 0.556178
Target:  5'- --aGAGCaUCgaGCUGCGCUCGGgugccgccUGAGc -3'
miRNA:   3'- uagUUCGaAGg-CGACGCGAGCC--------ACUC- -5'
7240 5' -56.1 NC_001900.1 + 40215 0.69 0.430718
Target:  5'- cAUCGAGUggcCCGCgaagauCGCUCGGUGGa -3'
miRNA:   3'- -UAGUUCGaa-GGCGac----GCGAGCCACUc -5'
7240 5' -56.1 NC_001900.1 + 4271 1.06 0.000961
Target:  5'- gAUCAAGCUUCCGCUGCGCUCGGUGAGc -3'
miRNA:   3'- -UAGUUCGAAGGCGACGCGAGCCACUC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.