miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7241 3' -59.1 NC_001900.1 + 31102 0.65 0.528489
Target:  5'- cGGAGCgagcuguGCGAucGCGGGGAUCaGCGucuGGAa -3'
miRNA:   3'- -CCUCG-------CGCUucCGCUCCUGG-CGC---UCU- -5'
7241 3' -59.1 NC_001900.1 + 12627 0.66 0.508995
Target:  5'- cGAGCuGCGGcccGGUGAGG-CCGUGAu- -3'
miRNA:   3'- cCUCG-CGCUu--CCGCUCCuGGCGCUcu -5'
7241 3' -59.1 NC_001900.1 + 18934 0.66 0.488809
Target:  5'- -cGGCucuguCGAugAGGCGcugucgaucAGGACCGCGAGGa -3'
miRNA:   3'- ccUCGc----GCU--UCCGC---------UCCUGGCGCUCU- -5'
7241 3' -59.1 NC_001900.1 + 12160 0.66 0.478857
Target:  5'- uGGAGCcCGAgcAGGCGAaGGACuacuuCGcCGAGGc -3'
miRNA:   3'- -CCUCGcGCU--UCCGCU-CCUG-----GC-GCUCU- -5'
7241 3' -59.1 NC_001900.1 + 43851 0.67 0.45926
Target:  5'- cGGccAGCGCGAGGGCu-GGGCCGacuGGu -3'
miRNA:   3'- -CC--UCGCGCUUCCGcuCCUGGCgcuCU- -5'
7241 3' -59.1 NC_001900.1 + 20581 0.67 0.421399
Target:  5'- aGGAGUuCGAuguacgAGGCuGAGGACCaCGAGu -3'
miRNA:   3'- -CCUCGcGCU------UCCG-CUCCUGGcGCUCu -5'
7241 3' -59.1 NC_001900.1 + 9498 0.68 0.376824
Target:  5'- aGGGGaGCGAuGGgGAGaGCCGCGaAGAg -3'
miRNA:   3'- -CCUCgCGCUuCCgCUCcUGGCGC-UCU- -5'
7241 3' -59.1 NC_001900.1 + 31494 0.69 0.335538
Target:  5'- cGGuGCGCGAGaugguGGCGGGGuucacGCCguaguugucgGCGAGAu -3'
miRNA:   3'- -CCuCGCGCUU-----CCGCUCC-----UGG----------CGCUCU- -5'
7241 3' -59.1 NC_001900.1 + 41776 0.69 0.319974
Target:  5'- -cGGCgGCGAGGGCGAuGGCUGCGGu- -3'
miRNA:   3'- ccUCG-CGCUUCCGCUcCUGGCGCUcu -5'
7241 3' -59.1 NC_001900.1 + 33763 0.7 0.290488
Target:  5'- gGGGGuCGUGGAGGCGuucGGGCCGUa--- -3'
miRNA:   3'- -CCUC-GCGCUUCCGCu--CCUGGCGcucu -5'
7241 3' -59.1 NC_001900.1 + 10456 0.72 0.230242
Target:  5'- cGAGCGCGAggagaugcgccgcuGGGaCGAGGaagagGCCGCGAu- -3'
miRNA:   3'- cCUCGCGCU--------------UCC-GCUCC-----UGGCGCUcu -5'
7241 3' -59.1 NC_001900.1 + 6312 0.72 0.204012
Target:  5'- uGGuGC-CGAuGGaCGAGGuCCGCGAGAu -3'
miRNA:   3'- -CCuCGcGCUuCC-GCUCCuGGCGCUCU- -5'
7241 3' -59.1 NC_001900.1 + 3128 1.1 0.000353
Target:  5'- uGGAGCGCGAAGGCGAGGACCGCGAGAu -3'
miRNA:   3'- -CCUCGCGCUUCCGCUCCUGGCGCUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.