Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7242 | 5' | -57.1 | NC_001900.1 | + | 15358 | 0.67 | 0.482677 |
Target: 5'- aCGagaaGGCGGuCCUGGUCGugaUCGAagaCGGCg -3' miRNA: 3'- -GCg---UUGCC-GGACCAGU---AGCUg--GUCGa -5' |
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7242 | 5' | -57.1 | NC_001900.1 | + | 17266 | 0.71 | 0.282075 |
Target: 5'- gGCucgGGCC-GGUCAucUCGACCGGCa -3' miRNA: 3'- gCGuugCCGGaCCAGU--AGCUGGUCGa -5' |
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7242 | 5' | -57.1 | NC_001900.1 | + | 3558 | 0.71 | 0.319424 |
Target: 5'- gGUAACGGCCUGGUgCAUcCGGuCUcGCUg -3' miRNA: 3'- gCGUUGCCGGACCA-GUA-GCU-GGuCGA- -5' |
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7242 | 5' | -57.1 | NC_001900.1 | + | 2257 | 0.7 | 0.33537 |
Target: 5'- gGUGACGGCCaGGUCGaggucagCGACgAGCa -3' miRNA: 3'- gCGUUGCCGGaCCAGUa------GCUGgUCGa -5' |
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7242 | 5' | -57.1 | NC_001900.1 | + | 34733 | 0.7 | 0.35951 |
Target: 5'- gCGCGAUGGCgUGGUCgAUCuccaucgcaucgaGACCGGUc -3' miRNA: 3'- -GCGUUGCCGgACCAG-UAG-------------CUGGUCGa -5' |
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7242 | 5' | -57.1 | NC_001900.1 | + | 1266 | 0.7 | 0.360364 |
Target: 5'- gGCGGCGGgUUcGGUgGuUCGACCGGCa -3' miRNA: 3'- gCGUUGCCgGA-CCAgU-AGCUGGUCGa -5' |
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7242 | 5' | -57.1 | NC_001900.1 | + | 726 | 0.69 | 0.414122 |
Target: 5'- cCGCAGCGGUCUGGaaCGUCuACC-GCa -3' miRNA: 3'- -GCGUUGCCGGACCa-GUAGcUGGuCGa -5' |
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7242 | 5' | -57.1 | NC_001900.1 | + | 43096 | 0.69 | 0.42355 |
Target: 5'- cCGCuuGCGGCCUGGcCGguucagCaGCCAGCc -3' miRNA: 3'- -GCGu-UGCCGGACCaGUa-----GcUGGUCGa -5' |
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7242 | 5' | -57.1 | NC_001900.1 | + | 26258 | 0.68 | 0.442786 |
Target: 5'- uCGCGcuCGGCCggcggGGUCcacuccucguuGUCGAUCAGCc -3' miRNA: 3'- -GCGUu-GCCGGa----CCAG-----------UAGCUGGUCGa -5' |
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7242 | 5' | -57.1 | NC_001900.1 | + | 24740 | 0.72 | 0.248272 |
Target: 5'- cCGCAG-GGCCUGGUuaCAUCuucggacaGACCGGCg -3' miRNA: 3'- -GCGUUgCCGGACCA--GUAG--------CUGGUCGa -5' |
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7242 | 5' | -57.1 | NC_001900.1 | + | 8091 | 0.77 | 0.113017 |
Target: 5'- aCGCGAUGGCCgaGGUCAUCGAa-GGCa -3' miRNA: 3'- -GCGUUGCCGGa-CCAGUAGCUggUCGa -5' |
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7242 | 5' | -57.1 | NC_001900.1 | + | 25442 | 0.66 | 0.599765 |
Target: 5'- gCGCAccauCaGCUccuUGGUCGUCGcACCGGCc -3' miRNA: 3'- -GCGUu---GcCGG---ACCAGUAGC-UGGUCGa -5' |
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7242 | 5' | -57.1 | NC_001900.1 | + | 22262 | 0.67 | 0.513699 |
Target: 5'- aGCGAUGGCCgaGGUCGUgGAgUgacggAGCUa -3' miRNA: 3'- gCGUUGCCGGa-CCAGUAgCUgG-----UCGA- -5' |
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7242 | 5' | -57.1 | NC_001900.1 | + | 29870 | 0.66 | 0.599765 |
Target: 5'- cCGCAcCGuccuugaacGCCUGGaUCAUCGuCCGGUc -3' miRNA: 3'- -GCGUuGC---------CGGACC-AGUAGCuGGUCGa -5' |
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7242 | 5' | -57.1 | NC_001900.1 | + | 3035 | 0.66 | 0.545506 |
Target: 5'- gGCGACGgguccGCCUGGagAUCGAgCgGGCa -3' miRNA: 3'- gCGUUGC-----CGGACCagUAGCU-GgUCGa -5' |
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7242 | 5' | -57.1 | NC_001900.1 | + | 30603 | 0.66 | 0.588824 |
Target: 5'- ----uUGGCCuUGGUCGUCuugugcuccuuGGCCAGCUu -3' miRNA: 3'- gcguuGCCGG-ACCAGUAG-----------CUGGUCGA- -5' |
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7242 | 5' | -57.1 | NC_001900.1 | + | 23947 | 0.66 | 0.545506 |
Target: 5'- uCGguGCGGCUcGGUCcaccUCGAaaCCGGCg -3' miRNA: 3'- -GCguUGCCGGaCCAGu---AGCU--GGUCGa -5' |
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7242 | 5' | -57.1 | NC_001900.1 | + | 26885 | 0.66 | 0.56706 |
Target: 5'- uCGCAACGGCC-GGaacCGUCGccgUCGGCg -3' miRNA: 3'- -GCGUUGCCGGaCCa--GUAGCu--GGUCGa -5' |
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7242 | 5' | -57.1 | NC_001900.1 | + | 28229 | 0.68 | 0.472537 |
Target: 5'- uGCgGACGGCCUcgucGGUagCGUCGugCAGUc -3' miRNA: 3'- gCG-UUGCCGGA----CCA--GUAGCugGUCGa -5' |
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7242 | 5' | -57.1 | NC_001900.1 | + | 25916 | 0.7 | 0.327325 |
Target: 5'- -aCGACGGUCUGGUCcUCGcCCGGgCUg -3' miRNA: 3'- gcGUUGCCGGACCAGuAGCuGGUC-GA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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