miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7243 3' -59.5 NC_001900.1 + 12870 0.66 0.46762
Target:  5'- cGGCGUcgucccggagAGGGGUucggcuGCCGAGGCgAugcugaagcGAGCc -3'
miRNA:   3'- uCCGCG----------UCUCCA------UGGCUCCGgU---------CUCG- -5'
7243 3' -59.5 NC_001900.1 + 26653 0.66 0.46762
Target:  5'- cAGGU-CAGAGGUGguuuuuagcCCGAGGaCCGGAu- -3'
miRNA:   3'- -UCCGcGUCUCCAU---------GGCUCC-GGUCUcg -5'
7243 3' -59.5 NC_001900.1 + 46653 0.66 0.457775
Target:  5'- cGGCaGCAGAaaGG-ACCGGGaGCCGGuaauucAGCu -3'
miRNA:   3'- uCCG-CGUCU--CCaUGGCUC-CGGUC------UCG- -5'
7243 3' -59.5 NC_001900.1 + 26058 0.66 0.438423
Target:  5'- cAGGuCGCccuuGGGGUugauGCCGAGGgCCuGcAGCa -3'
miRNA:   3'- -UCC-GCGu---CUCCA----UGGCUCC-GGuC-UCG- -5'
7243 3' -59.5 NC_001900.1 + 37595 0.66 0.428925
Target:  5'- cAGGCGCucguuguagucGGGGUACCGcGaCCAGAacGCg -3'
miRNA:   3'- -UCCGCGu----------CUCCAUGGCuCcGGUCU--CG- -5'
7243 3' -59.5 NC_001900.1 + 43139 0.66 0.428925
Target:  5'- -uGC-CAGAGGUugcuCCGGGGCUccGAGCc -3'
miRNA:   3'- ucCGcGUCUCCAu---GGCUCCGGu-CUCG- -5'
7243 3' -59.5 NC_001900.1 + 42068 0.67 0.410298
Target:  5'- aGGGUGuCAGGGGcagcgACCGGGuggauccacucGUCAGAGUg -3'
miRNA:   3'- -UCCGC-GUCUCCa----UGGCUC-----------CGGUCUCG- -5'
7243 3' -59.5 NC_001900.1 + 41743 0.67 0.375462
Target:  5'- cGGCGuCGGAGGUACacccgaccaagcccaGAccggcGGCgAGGGCg -3'
miRNA:   3'- uCCGC-GUCUCCAUGg--------------CU-----CCGgUCUCG- -5'
7243 3' -59.5 NC_001900.1 + 33764 0.67 0.374596
Target:  5'- gGGGuCGUGGAGGcguucggGCCGuaguacAGGCC-GAGCg -3'
miRNA:   3'- -UCC-GCGUCUCCa------UGGC------UCCGGuCUCG- -5'
7243 3' -59.5 NC_001900.1 + 19320 0.68 0.341057
Target:  5'- cGGCGguGGGGccaACaCGGuGGCC-GAGCa -3'
miRNA:   3'- uCCGCguCUCCa--UG-GCU-CCGGuCUCG- -5'
7243 3' -59.5 NC_001900.1 + 24726 0.68 0.32512
Target:  5'- cGGCGCuGGuGGUACCGcaGGGCCuGGu- -3'
miRNA:   3'- uCCGCG-UCuCCAUGGC--UCCGGuCUcg -5'
7243 3' -59.5 NC_001900.1 + 12231 0.68 0.317362
Target:  5'- aAGGUGCcGAugGGUACCacGGGCCAGAa- -3'
miRNA:   3'- -UCCGCGuCU--CCAUGGc-UCCGGUCUcg -5'
7243 3' -59.5 NC_001900.1 + 6413 0.68 0.317362
Target:  5'- gGGGCGUcgAGcAGGUGCuCGcGGCCA-AGCa -3'
miRNA:   3'- -UCCGCG--UC-UCCAUG-GCuCCGGUcUCG- -5'
7243 3' -59.5 NC_001900.1 + 15879 0.7 0.260317
Target:  5'- uGGGCGUugaucccgacGAGGuUGCCaagcuGGGCCAGGGCc -3'
miRNA:   3'- -UCCGCGu---------CUCC-AUGGc----UCCGGUCUCG- -5'
7243 3' -59.5 NC_001900.1 + 13419 0.71 0.201088
Target:  5'- uGGCGCu--GGUuCCGGGGCaagaAGGGCg -3'
miRNA:   3'- uCCGCGucuCCAuGGCUCCGg---UCUCG- -5'
7243 3' -59.5 NC_001900.1 + 28035 0.73 0.168719
Target:  5'- cGGGUGCGGAGccGCCaccgucacaggccguGAGGCcCAGGGCg -3'
miRNA:   3'- -UCCGCGUCUCcaUGG---------------CUCCG-GUCUCG- -5'
7243 3' -59.5 NC_001900.1 + 1171 0.73 0.162481
Target:  5'- gAGGCgGCGGuGGagccGCCGGaagcGGCCGGGGCg -3'
miRNA:   3'- -UCCG-CGUCuCCa---UGGCU----CCGGUCUCG- -5'
7243 3' -59.5 NC_001900.1 + 39236 0.73 0.158153
Target:  5'- gGGGUGaucuCAGAGGUGCCGuacAGGuCCgAGAGCc -3'
miRNA:   3'- -UCCGC----GUCUCCAUGGC---UCC-GG-UCUCG- -5'
7243 3' -59.5 NC_001900.1 + 2639 1.12 0.000195
Target:  5'- gAGGCGCAGAGGUACCGAGGCCAGAGCg -3'
miRNA:   3'- -UCCGCGUCUCCAUGGCUCCGGUCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.