miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7244 5' -54.4 NC_001900.1 + 10442 0.67 0.708799
Target:  5'- -gGCUAcuCCAUCGCCGagcGCGAggagaugcgccGCUGGg -3'
miRNA:   3'- ggUGGUucGGUAGCGGU---UGCU-----------CGACC- -5'
7244 5' -54.4 NC_001900.1 + 2261 0.67 0.708799
Target:  5'- aCgGCCAGGUCGagGUCAGCGAcgagcaGUUGGc -3'
miRNA:   3'- -GgUGGUUCGGUagCGGUUGCU------CGACC- -5'
7244 5' -54.4 NC_001900.1 + 36792 0.67 0.708799
Target:  5'- uCCACUggGCacucaCGUCGCCGACccaguGCgGGa -3'
miRNA:   3'- -GGUGGuuCG-----GUAGCGGUUGcu---CGaCC- -5'
7244 5' -54.4 NC_001900.1 + 8175 0.67 0.708799
Target:  5'- gCACCGAGaCgGUCGCCGAgaaggcguacguCGAGUggcaGGa -3'
miRNA:   3'- gGUGGUUC-GgUAGCGGUU------------GCUCGa---CC- -5'
7244 5' -54.4 NC_001900.1 + 37826 0.67 0.686999
Target:  5'- aCCACCAGGCaGUCGCacccuGCGuGCcacuccucgaugUGGg -3'
miRNA:   3'- -GGUGGUUCGgUAGCGgu---UGCuCG------------ACC- -5'
7244 5' -54.4 NC_001900.1 + 3102 0.67 0.683708
Target:  5'- -gACCGAcgugcucaagcagcGCC-UCGCCAagGCGAGCggcgGGg -3'
miRNA:   3'- ggUGGUU--------------CGGuAGCGGU--UGCUCGa---CC- -5'
7244 5' -54.4 NC_001900.1 + 40779 0.67 0.676013
Target:  5'- aCCACCAGGCCAUaCGgggaCCggUGcAGCUc- -3'
miRNA:   3'- -GGUGGUUCGGUA-GC----GGuuGC-UCGAcc -5'
7244 5' -54.4 NC_001900.1 + 37709 0.67 0.676013
Target:  5'- -gAgCGGGCC-UUGCCAgaugcaAUGAGCUGGc -3'
miRNA:   3'- ggUgGUUCGGuAGCGGU------UGCUCGACC- -5'
7244 5' -54.4 NC_001900.1 + 46110 0.68 0.652818
Target:  5'- gCCGCgAAGguagaugugaccuCCAUCGCC---GAGCUGGu -3'
miRNA:   3'- -GGUGgUUC-------------GGUAGCGGuugCUCGACC- -5'
7244 5' -54.4 NC_001900.1 + 22870 0.68 0.642845
Target:  5'- aCACCAAGaaguggAUCGCCgAGCGAgaccucGCUGGc -3'
miRNA:   3'- gGUGGUUCgg----UAGCGG-UUGCU------CGACC- -5'
7244 5' -54.4 NC_001900.1 + 3031 0.68 0.642845
Target:  5'- -uGCCAugcGCCG-CGCuCGGCG-GCUGGg -3'
miRNA:   3'- ggUGGUu--CGGUaGCG-GUUGCuCGACC- -5'
7244 5' -54.4 NC_001900.1 + 44058 0.68 0.631756
Target:  5'- gUACC-GGCCccCGCCGcCGuGCUGGa -3'
miRNA:   3'- gGUGGuUCGGuaGCGGUuGCuCGACC- -5'
7244 5' -54.4 NC_001900.1 + 41861 0.68 0.620666
Target:  5'- aCGCU-GGCCAa-GCuCGAUGAGCUGGg -3'
miRNA:   3'- gGUGGuUCGGUagCG-GUUGCUCGACC- -5'
7244 5' -54.4 NC_001900.1 + 24599 0.69 0.587497
Target:  5'- aCACCuGGUCGUUGCCGA--GGCUGa -3'
miRNA:   3'- gGUGGuUCGGUAGCGGUUgcUCGACc -5'
7244 5' -54.4 NC_001900.1 + 2900 0.69 0.587497
Target:  5'- aCCACCucgaagcuGCCGcuUCGCgCAACGGcCUGGu -3'
miRNA:   3'- -GGUGGuu------CGGU--AGCG-GUUGCUcGACC- -5'
7244 5' -54.4 NC_001900.1 + 42339 0.69 0.565559
Target:  5'- gCCACaucgggaAGGCCgcagcgggguaGUUGCCGAUGGGCUGc -3'
miRNA:   3'- -GGUGg------UUCGG-----------UAGCGGUUGCUCGACc -5'
7244 5' -54.4 NC_001900.1 + 45516 0.69 0.554668
Target:  5'- gCACCAGGCCGUUaCCGGCcccGAGCg-- -3'
miRNA:   3'- gGUGGUUCGGUAGcGGUUG---CUCGacc -5'
7244 5' -54.4 NC_001900.1 + 6008 0.69 0.54384
Target:  5'- uCgGCgCGAGCCggUGaCCuccGCGAGCUGGa -3'
miRNA:   3'- -GgUG-GUUCGGuaGC-GGu--UGCUCGACC- -5'
7244 5' -54.4 NC_001900.1 + 34672 0.69 0.54384
Target:  5'- uCCGCCcAGUgcauCAUCGCCAuGCGAGCcGa -3'
miRNA:   3'- -GGUGGuUCG----GUAGCGGU-UGCUCGaCc -5'
7244 5' -54.4 NC_001900.1 + 38679 0.69 0.54384
Target:  5'- aCGCCcuGGCCGUUGCCAuaGAGCUu- -3'
miRNA:   3'- gGUGGu-UCGGUAGCGGUugCUCGAcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.