miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7246 5' -58.4 NC_001900.1 + 42352 0.66 0.507053
Target:  5'- gGCCGCAGCGGgguagUUGCCgauggGC-UGC-CAc -3'
miRNA:   3'- -UGGCGUCGCCa----GAUGGa----CGuGCGuGU- -5'
7246 5' -58.4 NC_001900.1 + 16982 0.66 0.507053
Target:  5'- aGCCGguGUGGUCgcACUcgGCAUGgACGg -3'
miRNA:   3'- -UGGCguCGCCAGa-UGGa-CGUGCgUGU- -5'
7246 5' -58.4 NC_001900.1 + 22899 0.66 0.49669
Target:  5'- cUCGCuGGCGGcaccaaggaucUCUACa-GCACGCACGc -3'
miRNA:   3'- uGGCG-UCGCC-----------AGAUGgaCGUGCGUGU- -5'
7246 5' -58.4 NC_001900.1 + 5010 0.66 0.47626
Target:  5'- cACgGCGGCGGgg-GCCgGUAcuCGCACAc -3'
miRNA:   3'- -UGgCGUCGCCagaUGGaCGU--GCGUGU- -5'
7246 5' -58.4 NC_001900.1 + 26421 0.67 0.450343
Target:  5'- uCCGCAGCGauccccauccucuccGUCUugCUGcCAUGCGa- -3'
miRNA:   3'- uGGCGUCGC---------------CAGAugGAC-GUGCGUgu -5'
7246 5' -58.4 NC_001900.1 + 22673 0.67 0.427123
Target:  5'- -gCGCAGCGGUCgagUGCaaGCGuCGUACGu -3'
miRNA:   3'- ugGCGUCGCCAG---AUGgaCGU-GCGUGU- -5'
7246 5' -58.4 NC_001900.1 + 26904 0.67 0.417659
Target:  5'- cGCCGuCGGCGGUCUgGCCUucaGCcucaguuucaccGCGCugGc -3'
miRNA:   3'- -UGGC-GUCGCCAGA-UGGA---CG------------UGCGugU- -5'
7246 5' -58.4 NC_001900.1 + 42587 0.67 0.408325
Target:  5'- cGCCGUugacAGCGGaCUccagaGCCUGCuugACGCGCu -3'
miRNA:   3'- -UGGCG----UCGCCaGA-----UGGACG---UGCGUGu -5'
7246 5' -58.4 NC_001900.1 + 1197 0.67 0.399122
Target:  5'- gGCCGgGGCGGUUUaggcACCgGCaACGCAg- -3'
miRNA:   3'- -UGGCgUCGCCAGA----UGGaCG-UGCGUgu -5'
7246 5' -58.4 NC_001900.1 + 8761 0.68 0.381118
Target:  5'- gGCCGCAGCGGcucaCUGCCgaccgGCcacACGguCGa -3'
miRNA:   3'- -UGGCGUCGCCa---GAUGGa----CG---UGCguGU- -5'
7246 5' -58.4 NC_001900.1 + 5461 0.68 0.372323
Target:  5'- gACgGCGGCGGUcCUGCggaUGCAC-CGCGu -3'
miRNA:   3'- -UGgCGUCGCCA-GAUGg--ACGUGcGUGU- -5'
7246 5' -58.4 NC_001900.1 + 34034 0.68 0.354306
Target:  5'- -gUGCAGCGGU--GCCUGCuucggcgACGUACAc -3'
miRNA:   3'- ugGCGUCGCCAgaUGGACG-------UGCGUGU- -5'
7246 5' -58.4 NC_001900.1 + 36625 0.69 0.338542
Target:  5'- cAUCGCgaaGGCGGUCgccACCUugGUACGCAUg -3'
miRNA:   3'- -UGGCG---UCGCCAGa--UGGA--CGUGCGUGu -5'
7246 5' -58.4 NC_001900.1 + 47002 0.69 0.304775
Target:  5'- gACCGCuGCGGUCUgaacccugguguagGCCcagaacUGCACGuCGCu -3'
miRNA:   3'- -UGGCGuCGCCAGA--------------UGG------ACGUGC-GUGu -5'
7246 5' -58.4 NC_001900.1 + 8922 0.7 0.277838
Target:  5'- cGCgGCAGCGGU---CCUGCugGaCGCGg -3'
miRNA:   3'- -UGgCGUCGCCAgauGGACGugC-GUGU- -5'
7246 5' -58.4 NC_001900.1 + 48825 0.71 0.257418
Target:  5'- uGCUGguGUGGUgUGCCgUGUGCGCugGu -3'
miRNA:   3'- -UGGCguCGCCAgAUGG-ACGUGCGugU- -5'
7246 5' -58.4 NC_001900.1 + 3348 0.71 0.238243
Target:  5'- cACCGCAGCGGcCacguUCUGCugGCcCAc -3'
miRNA:   3'- -UGGCGUCGCCaGau--GGACGugCGuGU- -5'
7246 5' -58.4 NC_001900.1 + 724 0.79 0.06738
Target:  5'- gGCCGCAGCGGUCUggaacgucuaccgcaGCCgcuggugcgGCGCGUACu -3'
miRNA:   3'- -UGGCGUCGCCAGA---------------UGGa--------CGUGCGUGu -5'
7246 5' -58.4 NC_001900.1 + 2074 1.08 0.000431
Target:  5'- gACCGCAGCGGUCUACCUGCACGCACAg -3'
miRNA:   3'- -UGGCGUCGCCAGAUGGACGUGCGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.