miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7247 3' -52.4 NC_001900.1 + 25427 0.66 0.846477
Target:  5'- cGGUagcCCAACUGCGcgaggUUCGCGcCACCGa -3'
miRNA:   3'- -UCAgu-GGUUGAUGC-----AGGUGCaGUGGU- -5'
7247 3' -52.4 NC_001900.1 + 7985 0.66 0.846477
Target:  5'- aGGUCACCGGCcuggcccgcaACGUCUcggaggagaACGUCgACCGa -3'
miRNA:   3'- -UCAGUGGUUGa---------UGCAGG---------UGCAG-UGGU- -5'
7247 3' -52.4 NC_001900.1 + 46395 0.66 0.846477
Target:  5'- cAGgCACCGcaguuGCgacaGUCCACGUCGCUc -3'
miRNA:   3'- -UCaGUGGU-----UGaug-CAGGUGCAGUGGu -5'
7247 3' -52.4 NC_001900.1 + 8139 0.66 0.837523
Target:  5'- -aUCAUCAACgGCGUCUACGgCGCgAa -3'
miRNA:   3'- ucAGUGGUUGaUGCAGGUGCaGUGgU- -5'
7247 3' -52.4 NC_001900.1 + 17985 0.66 0.837523
Target:  5'- cGUCGCUggUUcagauCGUCCagGCGuUCACCAa -3'
miRNA:   3'- uCAGUGGuuGAu----GCAGG--UGC-AGUGGU- -5'
7247 3' -52.4 NC_001900.1 + 18136 0.66 0.828341
Target:  5'- cGUCcugGCaGACUGCGUCgGCGcagUCGCCGa -3'
miRNA:   3'- uCAG---UGgUUGAUGCAGgUGC---AGUGGU- -5'
7247 3' -52.4 NC_001900.1 + 15109 0.66 0.818942
Target:  5'- gAGcCACCGGCUggucgaGCGUCgGCcaCACCAg -3'
miRNA:   3'- -UCaGUGGUUGA------UGCAGgUGcaGUGGU- -5'
7247 3' -52.4 NC_001900.1 + 5409 0.67 0.799534
Target:  5'- gAGUaCGCCAGCggggACGcCUACGaCACCc -3'
miRNA:   3'- -UCA-GUGGUUGa---UGCaGGUGCaGUGGu -5'
7247 3' -52.4 NC_001900.1 + 38341 0.67 0.779388
Target:  5'- uGGcCACCGACUucGCGaacUCCAuaccgggcuCGUCGCCGu -3'
miRNA:   3'- -UCaGUGGUUGA--UGC---AGGU---------GCAGUGGU- -5'
7247 3' -52.4 NC_001900.1 + 6966 0.67 0.779388
Target:  5'- gGGagACUGGCUcuuGCGUgacgggcuccaCCACGUCACCGg -3'
miRNA:   3'- -UCagUGGUUGA---UGCA-----------GGUGCAGUGGU- -5'
7247 3' -52.4 NC_001900.1 + 37047 0.67 0.769068
Target:  5'- uGUCAgCCGACU---UCUGCGUCACCc -3'
miRNA:   3'- uCAGU-GGUUGAugcAGGUGCAGUGGu -5'
7247 3' -52.4 NC_001900.1 + 46317 0.67 0.756488
Target:  5'- aGGUCACCGACcucguCGUCCcacGCGgacggguugccgCGCCAg -3'
miRNA:   3'- -UCAGUGGUUGau---GCAGG---UGCa-----------GUGGU- -5'
7247 3' -52.4 NC_001900.1 + 43061 0.68 0.730772
Target:  5'- aGGUCACCGGCUcgcgccgauuccucgACGUagcgggcgugccCCAugcCGUCGCCGu -3'
miRNA:   3'- -UCAGUGGUUGA---------------UGCA------------GGU---GCAGUGGU- -5'
7247 3' -52.4 NC_001900.1 + 29565 0.68 0.715483
Target:  5'- cAG-CGCCGAgUACGUCCgagaGCGgucCACCGg -3'
miRNA:   3'- -UCaGUGGUUgAUGCAGG----UGCa--GUGGU- -5'
7247 3' -52.4 NC_001900.1 + 16338 0.68 0.715483
Target:  5'- cAGgCACCGACUACGUCgGugaugacgaaacCGUCACg- -3'
miRNA:   3'- -UCaGUGGUUGAUGCAGgU------------GCAGUGgu -5'
7247 3' -52.4 NC_001900.1 + 29967 0.68 0.704457
Target:  5'- uGUgGCCAggaAC-ACGcCCugGUCACCGg -3'
miRNA:   3'- uCAgUGGU---UGaUGCaGGugCAGUGGU- -5'
7247 3' -52.4 NC_001900.1 + 48703 0.68 0.704457
Target:  5'- cGUCGCCGGgUGgcUGUCCA-GUCGCCc -3'
miRNA:   3'- uCAGUGGUUgAU--GCAGGUgCAGUGGu -5'
7247 3' -52.4 NC_001900.1 + 19325 0.69 0.693356
Target:  5'- cGUCugCAA--GC-UCUACGUCACCAc -3'
miRNA:   3'- uCAGugGUUgaUGcAGGUGCAGUGGU- -5'
7247 3' -52.4 NC_001900.1 + 9490 0.69 0.648448
Target:  5'- --aCACCGACgcuUACGUCCACG--GCCGg -3'
miRNA:   3'- ucaGUGGUUG---AUGCAGGUGCagUGGU- -5'
7247 3' -52.4 NC_001900.1 + 13963 0.7 0.592029
Target:  5'- aGGUCGCCAACa--GUCCgguACGUCGgCAc -3'
miRNA:   3'- -UCAGUGGUUGaugCAGG---UGCAGUgGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.