miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7248 3' -54.5 NC_001900.1 + 16558 0.66 0.749627
Target:  5'- aCUGgagCGUCacagGCACCUGAGCuucucgguggUGUCGcaGCg -3'
miRNA:   3'- -GGCaa-GCAG----CGUGGACUCG----------ACAGC--UG- -5'
7248 3' -54.5 NC_001900.1 + 11852 0.66 0.743357
Target:  5'- gCCGUUCGacuaucugcacaaguUCGCACC--AGCUcugGUCGAg -3'
miRNA:   3'- -GGCAAGC---------------AGCGUGGacUCGA---CAGCUg -5'
7248 3' -54.5 NC_001900.1 + 3783 0.66 0.739153
Target:  5'- gUCGg-CGUCGuCACCUucGCgGUCGGCg -3'
miRNA:   3'- -GGCaaGCAGC-GUGGAcuCGaCAGCUG- -5'
7248 3' -54.5 NC_001900.1 + 35260 0.66 0.739153
Target:  5'- aUGUaCGUCGCuuucgGCUUGGGCUGgCGAg -3'
miRNA:   3'- gGCAaGCAGCG-----UGGACUCGACaGCUg -5'
7248 3' -54.5 NC_001900.1 + 27545 0.67 0.702796
Target:  5'- gCCGUUCGggcucgggucuugUGgAUCUGGGCUG-CGAUg -3'
miRNA:   3'- -GGCAAGCa------------GCgUGGACUCGACaGCUG- -5'
7248 3' -54.5 NC_001900.1 + 20454 0.67 0.663433
Target:  5'- cCCGUUCcugCGC-CCUGAGCUG-Ca-- -3'
miRNA:   3'- -GGCAAGca-GCGuGGACUCGACaGcug -5'
7248 3' -54.5 NC_001900.1 + 15658 0.68 0.652409
Target:  5'- cCCGUUCGccagCGCGCCg-----GUCGACa -3'
miRNA:   3'- -GGCAAGCa---GCGUGGacucgaCAGCUG- -5'
7248 3' -54.5 NC_001900.1 + 26648 0.7 0.532031
Target:  5'- cUCGUcgcggagguucUCGUCGUgcgaguucgauACCUG-GCUGUCGAUc -3'
miRNA:   3'- -GGCA-----------AGCAGCG-----------UGGACuCGACAGCUG- -5'
7248 3' -54.5 NC_001900.1 + 22780 0.7 0.490014
Target:  5'- gCGUUCGacacCGCuACCgGuGCUGUCGAUg -3'
miRNA:   3'- gGCAAGCa---GCG-UGGaCuCGACAGCUG- -5'
7248 3' -54.5 NC_001900.1 + 1256 1.13 0.000652
Target:  5'- aCCGUUCGUCGCACCUGAGCUGUCGACg -3'
miRNA:   3'- -GGCAAGCAGCGUGGACUCGACAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.