miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7248 5' -56.4 NC_001900.1 + 45321 0.66 0.633659
Target:  5'- gCCG-CGAgGUcaccuUGAGCUGGaAGuucAGGGUg -3'
miRNA:   3'- -GGCaGCUgCG-----ACUCGACC-UCu--UCCCG- -5'
7248 5' -56.4 NC_001900.1 + 1249 0.66 0.622755
Target:  5'- gCGgCGGCaGCgGAGCUGGcGgcGGGUu -3'
miRNA:   3'- gGCaGCUG-CGaCUCGACCuCuuCCCG- -5'
7248 5' -56.4 NC_001900.1 + 41946 0.66 0.622755
Target:  5'- aCCGUggaGACGUUGAGC--GAGuccGGGCc -3'
miRNA:   3'- -GGCAg--CUGCGACUCGacCUCuu-CCCG- -5'
7248 5' -56.4 NC_001900.1 + 23503 0.67 0.597721
Target:  5'- gCUGUCGAagucugcguucacuCGCUc-GCUGaAGAAGGGCu -3'
miRNA:   3'- -GGCAGCU--------------GCGAcuCGACcUCUUCCCG- -5'
7248 5' -56.4 NC_001900.1 + 36302 0.67 0.557811
Target:  5'- aCGUgGuCGCUGAGgaUGGucGGAcGGGCg -3'
miRNA:   3'- gGCAgCuGCGACUCg-ACC--UCUuCCCG- -5'
7248 5' -56.4 NC_001900.1 + 33327 0.68 0.547145
Target:  5'- aCgGUCuGGgucUGCUGGGCagGGGGAucccAGGGCg -3'
miRNA:   3'- -GgCAG-CU---GCGACUCGa-CCUCU----UCCCG- -5'
7248 5' -56.4 NC_001900.1 + 15890 0.68 0.526017
Target:  5'- cCCGaCGAgGUUGccaAGCUGGGccAGGGCc -3'
miRNA:   3'- -GGCaGCUgCGAC---UCGACCUcuUCCCG- -5'
7248 5' -56.4 NC_001900.1 + 25291 0.68 0.526016
Target:  5'- cCUcUUGAgGCUGuauGGCcuugGGAGggGGGCu -3'
miRNA:   3'- -GGcAGCUgCGAC---UCGa---CCUCuuCCCG- -5'
7248 5' -56.4 NC_001900.1 + 15092 0.68 0.515567
Target:  5'- cCCGUCGAC-CUGGaCUGGAGccaccGGCu -3'
miRNA:   3'- -GGCAGCUGcGACUcGACCUCuuc--CCG- -5'
7248 5' -56.4 NC_001900.1 + 23818 0.68 0.505202
Target:  5'- uCCGgucggcuaUCGGCGCUGGcuuccggcGCUGGGGcuGGGa -3'
miRNA:   3'- -GGC--------AGCUGCGACU--------CGACCUCuuCCCg -5'
7248 5' -56.4 NC_001900.1 + 19763 0.68 0.494929
Target:  5'- ---aCGGCGCUGAuuaCU-GAGGAGGGCa -3'
miRNA:   3'- ggcaGCUGCGACUc--GAcCUCUUCCCG- -5'
7248 5' -56.4 NC_001900.1 + 18178 0.69 0.464704
Target:  5'- uCUGgaGAUGCUgGGGCgGGAGGAGGuGCa -3'
miRNA:   3'- -GGCagCUGCGA-CUCGaCCUCUUCC-CG- -5'
7248 5' -56.4 NC_001900.1 + 38499 0.69 0.445097
Target:  5'- gCCgGUUGugGCUuggGAGCUGGcGuGGGGUu -3'
miRNA:   3'- -GG-CAGCugCGA---CUCGACCuCuUCCCG- -5'
7248 5' -56.4 NC_001900.1 + 20355 0.7 0.42975
Target:  5'- gCCGucuucuUCGACgGCcagGAGCUGcccugguacaucgccGAGGAGGGCa -3'
miRNA:   3'- -GGC------AGCUG-CGa--CUCGAC---------------CUCUUCCCG- -5'
7248 5' -56.4 NC_001900.1 + 7650 0.7 0.425962
Target:  5'- uUCGUUGACcaaggGGGUUGGGGGcgcAGGGCg -3'
miRNA:   3'- -GGCAGCUGcga--CUCGACCUCU---UCCCG- -5'
7248 5' -56.4 NC_001900.1 + 15776 0.72 0.330092
Target:  5'- aCCGUCGAgcugaagccgcUGCUGaAGCUGGgccAGAAGGcccGCg -3'
miRNA:   3'- -GGCAGCU-----------GCGAC-UCGACC---UCUUCC---CG- -5'
7248 5' -56.4 NC_001900.1 + 20893 0.72 0.314464
Target:  5'- cUCGcCGAgGCgcuGCUGGAGAaccaAGGGCu -3'
miRNA:   3'- -GGCaGCUgCGacuCGACCUCU----UCCCG- -5'
7248 5' -56.4 NC_001900.1 + 13982 0.73 0.270284
Target:  5'- aCGUCGGCacgacguGCUGAGCaGGAcaacGggGGGUu -3'
miRNA:   3'- gGCAGCUG-------CGACUCGaCCU----CuuCCCG- -5'
7248 5' -56.4 NC_001900.1 + 1290 1.14 0.000316
Target:  5'- aCCGUCGACGCUGAGCUGGAGAAGGGCa -3'
miRNA:   3'- -GGCAGCUGCGACUCGACCUCUUCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.