miRNA display CGI


Results 41 - 60 of 96 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7249 5' -49.3 NC_001900.1 + 26072 0.66 0.944528
Target:  5'- -gGUUGAUGCCGAgggccugcagcagcaUGuCCAcGAUGGUCu -3'
miRNA:   3'- cgUAGCUACGGCU---------------AU-GGUuUUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 25803 0.67 0.912461
Target:  5'- cGCcagCGAUGCCGGUGugguccugugcguCC-AGGCGaGCCu -3'
miRNA:   3'- -CGua-GCUACGGCUAU-------------GGuUUUGC-CGG- -5'
7249 5' -49.3 NC_001900.1 + 25327 0.68 0.898557
Target:  5'- --cUCGAUGCCGucgaccGUGCCAgcgaccaacgugaAGAUGGUCc -3'
miRNA:   3'- cguAGCUACGGC------UAUGGU-------------UUUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 25162 0.66 0.960671
Target:  5'- cGCAgaggcUCGG-GCCGGguaCGAGGCGaGCCu -3'
miRNA:   3'- -CGU-----AGCUaCGGCUaugGUUUUGC-CGG- -5'
7249 5' -49.3 NC_001900.1 + 24610 0.68 0.89928
Target:  5'- gGCAUgGGcuccgccacUGCgUGggGCCAAGGCGGCUu -3'
miRNA:   3'- -CGUAgCU---------ACG-GCuaUGGUUUUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 24495 0.66 0.956559
Target:  5'- aGCGUucgaccCGGUGCUGAcuCCGGucacGGCGGUCg -3'
miRNA:   3'- -CGUA------GCUACGGCUauGGUU----UUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 24025 0.72 0.684974
Target:  5'- cGCGgcCGAaGCCcgcgccaaccucGGUGCCGAGGCGGCUa -3'
miRNA:   3'- -CGUa-GCUaCGG------------CUAUGGUUUUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 23754 0.74 0.616269
Target:  5'- gGCAUCGAgaagGUCGAguucUACaAGAACGGCUc -3'
miRNA:   3'- -CGUAGCUa---CGGCU----AUGgUUUUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 23666 0.67 0.919601
Target:  5'- cGCAUggCGAUGaaG-UACCA-GAUGGCCu -3'
miRNA:   3'- -CGUA--GCUACggCuAUGGUuUUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 23170 0.66 0.942501
Target:  5'- uCGUUGAgccgGCCGAgcagAUCGguGAGCuGGCCg -3'
miRNA:   3'- cGUAGCUa---CGGCUa---UGGU--UUUG-CCGG- -5'
7249 5' -49.3 NC_001900.1 + 21899 0.79 0.346502
Target:  5'- uGCGUCGAUGCgaGGaGCCAcAACGGCg -3'
miRNA:   3'- -CGUAGCUACGg-CUaUGGUuUUGCCGg -5'
7249 5' -49.3 NC_001900.1 + 21630 0.66 0.947479
Target:  5'- aCAUCGGUGCuCGGcUACC----CGGUCg -3'
miRNA:   3'- cGUAGCUACG-GCU-AUGGuuuuGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 20888 0.66 0.960671
Target:  5'- aCAUCGAggacaacucugGCUGGggcACCGAGACcGCCu -3'
miRNA:   3'- cGUAGCUa----------CGGCUa--UGGUUUUGcCGG- -5'
7249 5' -49.3 NC_001900.1 + 20823 0.69 0.859664
Target:  5'- cCGUCGAcUGCaCGAcgcUACCGAcgaGGCCg -3'
miRNA:   3'- cGUAGCU-ACG-GCU---AUGGUUuugCCGG- -5'
7249 5' -49.3 NC_001900.1 + 20043 0.68 0.87634
Target:  5'- gGCGUCuacaccGCCGAUGuccCCGAAGguCGGCCu -3'
miRNA:   3'- -CGUAGcua---CGGCUAU---GGUUUU--GCCGG- -5'
7249 5' -49.3 NC_001900.1 + 18486 0.69 0.832735
Target:  5'- uCAUCGAgaagGCCaagGCCcuGGCGGCUg -3'
miRNA:   3'- cGUAGCUa---CGGcuaUGGuuUUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 18149 0.7 0.79367
Target:  5'- uGCGUCGgcGCagucGCCGAGugGGUCg -3'
miRNA:   3'- -CGUAGCuaCGgcuaUGGUUUugCCGG- -5'
7249 5' -49.3 NC_001900.1 + 18030 0.68 0.902144
Target:  5'- uCAUCG-UGCCGGUGguCCAGaucgucaucaaccugGcuGCGGCCg -3'
miRNA:   3'- cGUAGCuACGGCUAU--GGUU---------------U--UGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 17010 0.7 0.81751
Target:  5'- gGCAUCaaggcggcaGCCGAgACCAugaugcccgcgcuggAAGCGGCCa -3'
miRNA:   3'- -CGUAGcua------CGGCUaUGGU---------------UUUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 16724 0.67 0.937226
Target:  5'- cCGUCGAUGUCaacgucgacaagGAcACCAAGgGCGGCUu -3'
miRNA:   3'- cGUAGCUACGG------------CUaUGGUUU-UGCCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.