miRNA display CGI


Results 61 - 80 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7249 5' -49.3 NC_001900.1 + 26277 0.67 0.922108
Target:  5'- cGCAUCGAcagcaccgguagcggUGUCGAacgcGCCuu--CGGCCc -3'
miRNA:   3'- -CGUAGCU---------------ACGGCUa---UGGuuuuGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 6728 0.67 0.937226
Target:  5'- aGCAUCGAggaGUCGAuUGCCA--ACGaCCu -3'
miRNA:   3'- -CGUAGCUa--CGGCU-AUGGUuuUGCcGG- -5'
7249 5' -49.3 NC_001900.1 + 4394 0.66 0.942501
Target:  5'- cGCGUUccacGCUGucGCCGAGGCGGUCg -3'
miRNA:   3'- -CGUAGcua-CGGCuaUGGUUUUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 26072 0.66 0.944528
Target:  5'- -gGUUGAUGCCGAgggccugcagcagcaUGuCCAcGAUGGUCu -3'
miRNA:   3'- cgUAGCUACGGCU---------------AU-GGUuUUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 36602 0.66 0.947479
Target:  5'- uGCAUCGccgcGCCGucgaacGCCAucgcgaAGGCGGUCg -3'
miRNA:   3'- -CGUAGCua--CGGCua----UGGU------UUUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 5944 0.68 0.88349
Target:  5'- cGCAgcUCGAUGCUcugggcuGGcUGCUGAAcCGGCCa -3'
miRNA:   3'- -CGU--AGCUACGG-------CU-AUGGUUUuGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 20043 0.68 0.87634
Target:  5'- gGCGUCuacaccGCCGAUGuccCCGAAGguCGGCCu -3'
miRNA:   3'- -CGUAGcua---CGGCUAU---GGUUUU--GCCGG- -5'
7249 5' -49.3 NC_001900.1 + 800 1.14 0.001803
Target:  5'- gGCAUCGAUGCCGAUACCAAAACGGCCc -3'
miRNA:   3'- -CGUAGCUACGGCUAUGGUUUUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 41079 0.79 0.337902
Target:  5'- cCAUCGAUGCUGGUgaggagguugcuGCCucgauGCGGCCa -3'
miRNA:   3'- cGUAGCUACGGCUA------------UGGuuu--UGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 21899 0.79 0.346502
Target:  5'- uGCGUCGAUGCgaGGaGCCAcAACGGCg -3'
miRNA:   3'- -CGUAGCUACGg-CUaUGGUuUUGCCGg -5'
7249 5' -49.3 NC_001900.1 + 4573 0.75 0.525814
Target:  5'- aCAUCGAgcGCCGGUACaccguCGGCCu -3'
miRNA:   3'- cGUAGCUa-CGGCUAUGguuuuGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 12888 0.74 0.604806
Target:  5'- gGguUCGGcUGCCGAggcgaUGCUGAAGCGaGCCg -3'
miRNA:   3'- -CguAGCU-ACGGCU-----AUGGUUUUGC-CGG- -5'
7249 5' -49.3 NC_001900.1 + 15931 0.74 0.604806
Target:  5'- cGCccUGAUGgaCCGGgugACCAAGAUGGCCg -3'
miRNA:   3'- -CGuaGCUAC--GGCUa--UGGUUUUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 30620 0.73 0.627748
Target:  5'- --cUCGAaGCCGuUGCCGAAGCccucGGCCg -3'
miRNA:   3'- cguAGCUaCGGCuAUGGUUUUG----CCGG- -5'
7249 5' -49.3 NC_001900.1 + 35639 0.73 0.63923
Target:  5'- gGCcUCGAUGUCGA--UCAGAuCGGCCc -3'
miRNA:   3'- -CGuAGCUACGGCUauGGUUUuGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 31391 0.73 0.67359
Target:  5'- aGCAUCG-UGCCGAgggugucgGCCAGcgUGGUg -3'
miRNA:   3'- -CGUAGCuACGGCUa-------UGGUUuuGCCGg -5'
7249 5' -49.3 NC_001900.1 + 15881 0.69 0.850934
Target:  5'- gGCGUUGAUcCCGAcgagguUGCCAAGcugGGCCa -3'
miRNA:   3'- -CGUAGCUAcGGCU------AUGGUUUug-CCGG- -5'
7249 5' -49.3 NC_001900.1 + 38995 0.69 0.850934
Target:  5'- uGCGUUGGUGaaGuugGCCAGcuCGGCUg -3'
miRNA:   3'- -CGUAGCUACggCua-UGGUUuuGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 20823 0.69 0.859664
Target:  5'- cCGUCGAcUGCaCGAcgcUACCGAcgaGGCCg -3'
miRNA:   3'- cGUAGCU-ACG-GCU---AUGGUUuugCCGG- -5'
7249 5' -49.3 NC_001900.1 + 2678 0.69 0.868136
Target:  5'- cGCAacugCGGUGCCugcuacaacGCCA--GCGGCCa -3'
miRNA:   3'- -CGUa---GCUACGGcua------UGGUuuUGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.