miRNA display CGI


Results 81 - 96 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7249 5' -49.3 NC_001900.1 + 4573 0.75 0.525814
Target:  5'- aCAUCGAgcGCCGGUACaccguCGGCCu -3'
miRNA:   3'- cGUAGCUa-CGGCUAUGguuuuGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 21899 0.79 0.346502
Target:  5'- uGCGUCGAUGCgaGGaGCCAcAACGGCg -3'
miRNA:   3'- -CGUAGCUACGg-CUaUGGUuUUGCCGg -5'
7249 5' -49.3 NC_001900.1 + 41079 0.79 0.337902
Target:  5'- cCAUCGAUGCUGGUgaggagguugcuGCCucgauGCGGCCa -3'
miRNA:   3'- cGUAGCUACGGCUA------------UGGuuu--UGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 38555 0.72 0.728729
Target:  5'- gGCGUCGAccaucgUGCCcagcagGCCGAGgcccaucGCGGCCu -3'
miRNA:   3'- -CGUAGCU------ACGGcua---UGGUUU-------UGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 14872 0.73 0.67359
Target:  5'- cGCAUCGGUGuuGGgcACCucgGAGUGGCCu -3'
miRNA:   3'- -CGUAGCUACggCUa-UGGu--UUUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 45815 0.71 0.762406
Target:  5'- aGCAUCuccagGUCGAacggguUGCCGAGGuCGGCCa -3'
miRNA:   3'- -CGUAGcua--CGGCU------AUGGUUUU-GCCGG- -5'
7249 5' -49.3 NC_001900.1 + 5944 0.68 0.88349
Target:  5'- cGCAgcUCGAUGCUcugggcuGGcUGCUGAAcCGGCCa -3'
miRNA:   3'- -CGU--AGCUACGG-------CU-AUGGUUUuGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 20043 0.68 0.87634
Target:  5'- gGCGUCuacaccGCCGAUGuccCCGAAGguCGGCCu -3'
miRNA:   3'- -CGUAGcua---CGGCUAU---GGUUUU--GCCGG- -5'
7249 5' -49.3 NC_001900.1 + 2678 0.69 0.868136
Target:  5'- cGCAacugCGGUGCCugcuacaacGCCA--GCGGCCa -3'
miRNA:   3'- -CGUa---GCUACGGcua------UGGUuuUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 20823 0.69 0.859664
Target:  5'- cCGUCGAcUGCaCGAcgcUACCGAcgaGGCCg -3'
miRNA:   3'- cGUAGCU-ACG-GCU---AUGGUUuugCCGG- -5'
7249 5' -49.3 NC_001900.1 + 38995 0.69 0.850934
Target:  5'- uGCGUUGGUGaaGuugGCCAGcuCGGCUg -3'
miRNA:   3'- -CGUAGCUACggCua-UGGUUuuGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 15881 0.69 0.850934
Target:  5'- gGCGUUGAUcCCGAcgagguUGCCAAGcugGGCCa -3'
miRNA:   3'- -CGUAGCUAcGGCU------AUGGUUUug-CCGG- -5'
7249 5' -49.3 NC_001900.1 + 32067 0.69 0.850934
Target:  5'- cGCcUUGAUGCCGuccAUGCCGAGuGCGaCCa -3'
miRNA:   3'- -CGuAGCUACGGC---UAUGGUUU-UGCcGG- -5'
7249 5' -49.3 NC_001900.1 + 35092 0.69 0.841955
Target:  5'- aCGUCG-UGCCGAcgUACCGGAcUGGUUg -3'
miRNA:   3'- cGUAGCuACGGCU--AUGGUUUuGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 47859 0.7 0.783416
Target:  5'- uGCcugCGuUGCCGGUGCCuAAAccgcccCGGCCg -3'
miRNA:   3'- -CGua-GCuACGGCUAUGGuUUU------GCCGG- -5'
7249 5' -49.3 NC_001900.1 + 800 1.14 0.001803
Target:  5'- gGCAUCGAUGCCGAUACCAAAACGGCCc -3'
miRNA:   3'- -CGUAGCUACGGCUAUGGUUUUGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.