miRNA display CGI


Results 81 - 96 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7249 5' -49.3 NC_001900.1 + 33778 0.75 0.548067
Target:  5'- gGCGUCucgGCCGA-ACCGu-GCGGCCa -3'
miRNA:   3'- -CGUAGcuaCGGCUaUGGUuuUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 34969 0.76 0.481347
Target:  5'- -aGUgGGUGUCGAUcaggucgACCAAGGCGGCUg -3'
miRNA:   3'- cgUAgCUACGGCUA-------UGGUUUUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 18149 0.7 0.79367
Target:  5'- uGCGUCGgcGCagucGCCGAGugGGUCg -3'
miRNA:   3'- -CGUAGCuaCGgcuaUGGUUUugCCGG- -5'
7249 5' -49.3 NC_001900.1 + 46145 0.7 0.79367
Target:  5'- -gGUCGAUgaccagGCCGuUGCgCGAAGCGGCa -3'
miRNA:   3'- cgUAGCUA------CGGCuAUG-GUUUUGCCGg -5'
7249 5' -49.3 NC_001900.1 + 15777 0.7 0.79367
Target:  5'- cCGUCGAgcugaaGCCGcUGCUGAAGCugGGCCa -3'
miRNA:   3'- cGUAGCUa-----CGGCuAUGGUUUUG--CCGG- -5'
7249 5' -49.3 NC_001900.1 + 3928 0.68 0.875532
Target:  5'- aGCuggcCGAgacGCCGGUACCcgccuccacggcgAAcGCGGCCg -3'
miRNA:   3'- -CGua--GCUa--CGGCUAUGG-------------UUuUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 38021 0.69 0.859664
Target:  5'- cGgGUUGAUaGCCGAUGaucggcUCGAAAUGGUCg -3'
miRNA:   3'- -CgUAGCUA-CGGCUAU------GGUUUUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 10760 0.69 0.850934
Target:  5'- aGCGUCGGuaUGCgGAagcUGCCGAccugGGCCg -3'
miRNA:   3'- -CGUAGCU--ACGgCU---AUGGUUuug-CCGG- -5'
7249 5' -49.3 NC_001900.1 + 5675 0.69 0.850934
Target:  5'- cGCAcucagCGAccGCCGcgACCucGAAACGGUCa -3'
miRNA:   3'- -CGUa----GCUa-CGGCuaUGG--UUUUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 39367 0.69 0.850934
Target:  5'- aGCggUGAUGCCGuaggugGCCAGGAUccgGGUCu -3'
miRNA:   3'- -CGuaGCUACGGCua----UGGUUUUG---CCGG- -5'
7249 5' -49.3 NC_001900.1 + 3535 0.69 0.841954
Target:  5'- cCAUCGAcgcggcGCuCGggGCCGGuAACGGCCu -3'
miRNA:   3'- cGUAGCUa-----CG-GCuaUGGUU-UUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 18486 0.69 0.832735
Target:  5'- uCAUCGAgaagGCCaagGCCcuGGCGGCUg -3'
miRNA:   3'- cGUAGCUa---CGGcuaUGGuuUUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 11678 0.69 0.832735
Target:  5'- cGCAgUCGAaGCCGcagUCAAGGCGGCg -3'
miRNA:   3'- -CGU-AGCUaCGGCuauGGUUUUGCCGg -5'
7249 5' -49.3 NC_001900.1 + 10517 0.69 0.832735
Target:  5'- gGCA-CGAUgGUCGAcGCCGAcccGACGGUCc -3'
miRNA:   3'- -CGUaGCUA-CGGCUaUGGUU---UUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 17010 0.7 0.81751
Target:  5'- gGCAUCaaggcggcaGCCGAgACCAugaugcccgcgcuggAAGCGGCCa -3'
miRNA:   3'- -CGUAGcua------CGGCUaUGGU---------------UUUGCCGG- -5'
7249 5' -49.3 NC_001900.1 + 29360 0.78 0.373232
Target:  5'- -gGUCGGUGCCGAUcagcACCGGAcccaucuccuCGGCCa -3'
miRNA:   3'- cgUAGCUACGGCUA----UGGUUUu---------GCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.