Results 21 - 35 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7251 | 5' | -57.7 | NC_001900.1 | + | 5570 | 0.66 | 0.521396 |
Target: 5'- -gACgCGGaGCAgGCGGCGCACCGaGCu -3' miRNA: 3'- ugUG-GUCgCGUgUGCCGUGUGGUgUG- -5' |
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7251 | 5' | -57.7 | NC_001900.1 | + | 8638 | 0.67 | 0.463548 |
Target: 5'- gGCACCGGCGCcccgcugguguuccuGCACGGgCucucggugaGCGCCAagGCg -3' miRNA: 3'- -UGUGGUCGCG---------------UGUGCC-G---------UGUGGUg-UG- -5' |
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7251 | 5' | -57.7 | NC_001900.1 | + | 13405 | 0.67 | 0.449609 |
Target: 5'- cCGCCAGagGCACAUGGCGCugguuCCGgGg -3' miRNA: 3'- uGUGGUCg-CGUGUGCCGUGu----GGUgUg -5' |
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7251 | 5' | -57.7 | NC_001900.1 | + | 31278 | 0.67 | 0.449609 |
Target: 5'- cCACCAGCGUgggcaGCAuCGGCugaauCGCCugcaGCGCa -3' miRNA: 3'- uGUGGUCGCG-----UGU-GCCGu----GUGG----UGUG- -5' |
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7251 | 5' | -57.7 | NC_001900.1 | + | 30997 | 0.68 | 0.420543 |
Target: 5'- cGCGCCAGCcuGCAcCACGGcCGCAgCCAgGu -3' miRNA: 3'- -UGUGGUCG--CGU-GUGCC-GUGU-GGUgUg -5' |
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7251 | 5' | -57.7 | NC_001900.1 | + | 12799 | 0.68 | 0.411109 |
Target: 5'- cCGCUGGCGaugaaggaACugGGCuccaagaacgaGCGCCACGCa -3' miRNA: 3'- uGUGGUCGCg-------UGugCCG-----------UGUGGUGUG- -5' |
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7251 | 5' | -57.7 | NC_001900.1 | + | 8315 | 0.69 | 0.3324 |
Target: 5'- cACGgCGGCGCuCGCGGCGCugACgACAUc -3' miRNA: 3'- -UGUgGUCGCGuGUGCCGUG--UGgUGUG- -5' |
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7251 | 5' | -57.7 | NC_001900.1 | + | 42780 | 0.71 | 0.270132 |
Target: 5'- aGCGCCAGCGaCGaugucgccgauguuCGCGGCuGCGCC-CGCg -3' miRNA: 3'- -UGUGGUCGC-GU--------------GUGCCG-UGUGGuGUG- -5' |
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7251 | 5' | -57.7 | NC_001900.1 | + | 5919 | 0.71 | 0.258599 |
Target: 5'- gACAUCAGCuCAgGCGGCAC-CCgaGCGCa -3' miRNA: 3'- -UGUGGUCGcGUgUGCCGUGuGG--UGUG- -5' |
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7251 | 5' | -57.7 | NC_001900.1 | + | 47721 | 0.72 | 0.23305 |
Target: 5'- cCGCCAGCGCguugaACGCcGCACGCUucuGCGCg -3' miRNA: 3'- uGUGGUCGCG-----UGUGcCGUGUGG---UGUG- -5' |
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7251 | 5' | -57.7 | NC_001900.1 | + | 9612 | 0.74 | 0.159899 |
Target: 5'- gACGCCaAGUaucccgGCcCACGGUGCGCCACGCa -3' miRNA: 3'- -UGUGG-UCG------CGuGUGCCGUGUGGUGUG- -5' |
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7251 | 5' | -57.7 | NC_001900.1 | + | 44321 | 0.76 | 0.124147 |
Target: 5'- -uGCCAGCGCgaGCGCGGCACaugucguggacccACUGCGCg -3' miRNA: 3'- ugUGGUCGCG--UGUGCCGUG-------------UGGUGUG- -5' |
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7251 | 5' | -57.7 | NC_001900.1 | + | 7860 | 0.76 | 0.124147 |
Target: 5'- uGCACCAGCagGUGCugGGCGCGCUgaucaagACGCg -3' miRNA: 3'- -UGUGGUCG--CGUGugCCGUGUGG-------UGUG- -5' |
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7251 | 5' | -57.7 | NC_001900.1 | + | 15663 | 0.77 | 0.093763 |
Target: 5'- uCGCCAGCGCGC-CGGUcgACACCGCu- -3' miRNA: 3'- uGUGGUCGCGUGuGCCG--UGUGGUGug -5' |
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7251 | 5' | -57.7 | NC_001900.1 | + | 11145 | 0.66 | 0.542745 |
Target: 5'- aGCGCCucauccacggugAGCGCAacaagaacUACGGC-CACC-CGCg -3' miRNA: 3'- -UGUGG------------UCGCGU--------GUGCCGuGUGGuGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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