miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7252 5' -54.3 NC_001900.1 + 23381 0.66 0.717558
Target:  5'- uCCaAGCGGCCGGuGAC-CGUGC-CGCc -3'
miRNA:   3'- -GG-UCGUUGGCUcCUGuGUACGuGCGu -5'
7252 5' -54.3 NC_001900.1 + 4367 0.67 0.684619
Target:  5'- gCCAGCGGCCuggcugccgcaGGGGAcCGCGUucCACGCu -3'
miRNA:   3'- -GGUCGUUGG-----------CUCCU-GUGUAc-GUGCGu -5'
7252 5' -54.3 NC_001900.1 + 44008 0.67 0.681295
Target:  5'- aCCgGGCcACCGGGGAUguccaucgucaucaGCGUGCAaGCGg -3'
miRNA:   3'- -GG-UCGuUGGCUCCUG--------------UGUACGUgCGU- -5'
7252 5' -54.3 NC_001900.1 + 14704 0.67 0.662381
Target:  5'- cCCuGCAACCuAGGGCACAU-CAaccuCGCGg -3'
miRNA:   3'- -GGuCGUUGGcUCCUGUGUAcGU----GCGU- -5'
7252 5' -54.3 NC_001900.1 + 35195 0.67 0.661266
Target:  5'- aCCAGCucuUCGGGGuagacgaGCACcgGCugGUAc -3'
miRNA:   3'- -GGUCGuu-GGCUCC-------UGUGuaCGugCGU- -5'
7252 5' -54.3 NC_001900.1 + 8923 0.68 0.617641
Target:  5'- gCGGCAGCgGuccugcuGGACGCGgcUGCugGCc -3'
miRNA:   3'- gGUCGUUGgCu------CCUGUGU--ACGugCGu -5'
7252 5' -54.3 NC_001900.1 + 2702 0.68 0.584185
Target:  5'- gCCAGCGGCCaGAGGcuuCGCGacgacugGCGCgGCAa -3'
miRNA:   3'- -GGUCGUUGG-CUCCu--GUGUa------CGUG-CGU- -5'
7252 5' -54.3 NC_001900.1 + 434 0.68 0.584185
Target:  5'- aCAGCAcccauACCGGGcACAUaacgagcagccuAUGCACGCGg -3'
miRNA:   3'- gGUCGU-----UGGCUCcUGUG------------UACGUGCGU- -5'
7252 5' -54.3 NC_001900.1 + 17518 0.69 0.529359
Target:  5'- -aGGCGuACCGGGGugGCAUGaa-GCAg -3'
miRNA:   3'- ggUCGU-UGGCUCCugUGUACgugCGU- -5'
7252 5' -54.3 NC_001900.1 + 4782 0.69 0.52828
Target:  5'- aCCGGgaacCAACCGGGaGACgacuuccagcucgGCGUGUACGCGc -3'
miRNA:   3'- -GGUC----GUUGGCUC-CUG-------------UGUACGUGCGU- -5'
7252 5' -54.3 NC_001900.1 + 20888 0.69 0.518607
Target:  5'- gCCAGCucGCCGAGG-CGC-UGCugGa- -3'
miRNA:   3'- -GGUCGu-UGGCUCCuGUGuACGugCgu -5'
7252 5' -54.3 NC_001900.1 + 43049 0.7 0.507942
Target:  5'- uCCAGCucGCgGAGGuCACcgGCuCGCGc -3'
miRNA:   3'- -GGUCGu-UGgCUCCuGUGuaCGuGCGU- -5'
7252 5' -54.3 NC_001900.1 + 38936 0.7 0.497371
Target:  5'- cUCAGguACUGGGGAgGgaguccCGUGUACGCAg -3'
miRNA:   3'- -GGUCguUGGCUCCUgU------GUACGUGCGU- -5'
7252 5' -54.3 NC_001900.1 + 42850 0.7 0.486901
Target:  5'- cCCAGgauGCCGGGGACGagaGUGCcgACGUAg -3'
miRNA:   3'- -GGUCgu-UGGCUCCUGUg--UACG--UGCGU- -5'
7252 5' -54.3 NC_001900.1 + 23026 0.7 0.486901
Target:  5'- gCAGUAcCCGAcGGCACGgcgGCACGCc -3'
miRNA:   3'- gGUCGUuGGCUcCUGUGUa--CGUGCGu -5'
7252 5' -54.3 NC_001900.1 + 1209 0.66 0.749709
Target:  5'- aCCgAGCAcCgCGAGGuuCGCGUcacgGCACGCGa -3'
miRNA:   3'- -GG-UCGUuG-GCUCCu-GUGUA----CGUGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.