miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7254 3' -53 NC_001900.1 + 16144 0.66 0.814309
Target:  5'- -----cGAUCaGCUCGGCGAGGGCgCGg -3'
miRNA:   3'- ucauuaUUGGcCGGGUUGUUCCCG-GC- -5'
7254 3' -53 NC_001900.1 + 5564 0.66 0.814309
Target:  5'- cGUGAUcaugauccagGACCGGCCCuuguAGaGCCGa -3'
miRNA:   3'- uCAUUA----------UUGGCCGGGuuguUCcCGGC- -5'
7254 3' -53 NC_001900.1 + 34862 0.66 0.804585
Target:  5'- --gAGgcACCGGCCCAGa---GGCCGu -3'
miRNA:   3'- ucaUUauUGGCCGGGUUguucCCGGC- -5'
7254 3' -53 NC_001900.1 + 37275 0.66 0.79467
Target:  5'- cGUcGUAcaCGGCCC-GCAgcGGGGCCa -3'
miRNA:   3'- uCAuUAUugGCCGGGuUGU--UCCCGGc -5'
7254 3' -53 NC_001900.1 + 11276 0.66 0.79467
Target:  5'- cGUGGagAACUGGCCCGGaaa-GGCCGc -3'
miRNA:   3'- uCAUUa-UUGGCCGGGUUguucCCGGC- -5'
7254 3' -53 NC_001900.1 + 23171 0.66 0.784576
Target:  5'- cGUug-AGCCGGCCgAGCAgaucggugAGcuGGCCGg -3'
miRNA:   3'- uCAuuaUUGGCCGGgUUGU--------UC--CCGGC- -5'
7254 3' -53 NC_001900.1 + 28064 0.66 0.784576
Target:  5'- cGUGAUcuUCGuGCCCGcCGGGGGCgGc -3'
miRNA:   3'- uCAUUAuuGGC-CGGGUuGUUCCCGgC- -5'
7254 3' -53 NC_001900.1 + 10765 0.66 0.774313
Target:  5'- --cGGUAugCGGaagcugCCGACcuGGGCCGg -3'
miRNA:   3'- ucaUUAUugGCCg-----GGUUGuuCCCGGC- -5'
7254 3' -53 NC_001900.1 + 23232 0.67 0.753334
Target:  5'- -----cGGCCGGCUCAACGAcGGUCu -3'
miRNA:   3'- ucauuaUUGGCCGGGUUGUUcCCGGc -5'
7254 3' -53 NC_001900.1 + 15338 0.67 0.731832
Target:  5'- uGUGAaGACCGGCcagaCCAACGAGaaGGCgGu -3'
miRNA:   3'- uCAUUaUUGGCCG----GGUUGUUC--CCGgC- -5'
7254 3' -53 NC_001900.1 + 384 0.67 0.731832
Target:  5'- --cAAUuccCCGGCCCuuguuGGGCCGg -3'
miRNA:   3'- ucaUUAuu-GGCCGGGuuguuCCCGGC- -5'
7254 3' -53 NC_001900.1 + 2416 0.67 0.709907
Target:  5'- -----gAGCCGGCCCAACucacucuGcGGCUGc -3'
miRNA:   3'- ucauuaUUGGCCGGGUUGuu-----C-CCGGC- -5'
7254 3' -53 NC_001900.1 + 2532 0.68 0.687658
Target:  5'- cGGUGGcAGcCCGGaCgCAGCcGGGGCCGu -3'
miRNA:   3'- -UCAUUaUU-GGCC-GgGUUGuUCCCGGC- -5'
7254 3' -53 NC_001900.1 + 1663 0.68 0.676443
Target:  5'- -----aGGCgUGGUUCGGCAAGGGCCa -3'
miRNA:   3'- ucauuaUUG-GCCGGGUUGUUCCCGGc -5'
7254 3' -53 NC_001900.1 + 32737 0.69 0.642579
Target:  5'- cGUAGUcgguGCCuGCCCAGCucGGGUCu -3'
miRNA:   3'- uCAUUAu---UGGcCGGGUUGuuCCCGGc -5'
7254 3' -53 NC_001900.1 + 13012 0.69 0.642579
Target:  5'- cGUGGUcAgCGGCggCGGCGAGGGCUGa -3'
miRNA:   3'- uCAUUAuUgGCCGg-GUUGUUCCCGGC- -5'
7254 3' -53 NC_001900.1 + 15615 0.69 0.631255
Target:  5'- ------cACC-GCCCGGCGAGaGGCCGa -3'
miRNA:   3'- ucauuauUGGcCGGGUUGUUC-CCGGC- -5'
7254 3' -53 NC_001900.1 + 30795 0.69 0.597331
Target:  5'- uGGUGGacccCCGGCCUuuC-GGGGCCGg -3'
miRNA:   3'- -UCAUUauu-GGCCGGGuuGuUCCCGGC- -5'
7254 3' -53 NC_001900.1 + 26661 0.7 0.552578
Target:  5'- aGGUGGUuuuuagcccgagGACCGGaucCCCGAgaGGGGGCCGc -3'
miRNA:   3'- -UCAUUA------------UUGGCC---GGGUUg-UUCCCGGC- -5'
7254 3' -53 NC_001900.1 + 26071 0.7 0.552578
Target:  5'- -------cCCGGCCCAccacgcccggACAAGGGCgGg -3'
miRNA:   3'- ucauuauuGGCCGGGU----------UGUUCCCGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.