Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
7254 | 3' | -53 | NC_001900.1 | + | 5564 | 0.66 | 0.814309 |
Target: 5'- cGUGAUcaugauccagGACCGGCCCuuguAGaGCCGa -3' miRNA: 3'- uCAUUA----------UUGGCCGGGuuguUCcCGGC- -5' |
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7254 | 3' | -53 | NC_001900.1 | + | 16144 | 0.66 | 0.814309 |
Target: 5'- -----cGAUCaGCUCGGCGAGGGCgCGg -3' miRNA: 3'- ucauuaUUGGcCGGGUUGUUCCCG-GC- -5' |
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7254 | 3' | -53 | NC_001900.1 | + | 34862 | 0.66 | 0.804585 |
Target: 5'- --gAGgcACCGGCCCAGa---GGCCGu -3' miRNA: 3'- ucaUUauUGGCCGGGUUguucCCGGC- -5' |
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7254 | 3' | -53 | NC_001900.1 | + | 37275 | 0.66 | 0.79467 |
Target: 5'- cGUcGUAcaCGGCCC-GCAgcGGGGCCa -3' miRNA: 3'- uCAuUAUugGCCGGGuUGU--UCCCGGc -5' |
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7254 | 3' | -53 | NC_001900.1 | + | 11276 | 0.66 | 0.79467 |
Target: 5'- cGUGGagAACUGGCCCGGaaa-GGCCGc -3' miRNA: 3'- uCAUUa-UUGGCCGGGUUguucCCGGC- -5' |
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7254 | 3' | -53 | NC_001900.1 | + | 28064 | 0.66 | 0.784576 |
Target: 5'- cGUGAUcuUCGuGCCCGcCGGGGGCgGc -3' miRNA: 3'- uCAUUAuuGGC-CGGGUuGUUCCCGgC- -5' |
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7254 | 3' | -53 | NC_001900.1 | + | 23171 | 0.66 | 0.784576 |
Target: 5'- cGUug-AGCCGGCCgAGCAgaucggugAGcuGGCCGg -3' miRNA: 3'- uCAuuaUUGGCCGGgUUGU--------UC--CCGGC- -5' |
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7254 | 3' | -53 | NC_001900.1 | + | 10765 | 0.66 | 0.774313 |
Target: 5'- --cGGUAugCGGaagcugCCGACcuGGGCCGg -3' miRNA: 3'- ucaUUAUugGCCg-----GGUUGuuCCCGGC- -5' |
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7254 | 3' | -53 | NC_001900.1 | + | 23232 | 0.67 | 0.753334 |
Target: 5'- -----cGGCCGGCUCAACGAcGGUCu -3' miRNA: 3'- ucauuaUUGGCCGGGUUGUUcCCGGc -5' |
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7254 | 3' | -53 | NC_001900.1 | + | 384 | 0.67 | 0.731832 |
Target: 5'- --cAAUuccCCGGCCCuuguuGGGCCGg -3' miRNA: 3'- ucaUUAuu-GGCCGGGuuguuCCCGGC- -5' |
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7254 | 3' | -53 | NC_001900.1 | + | 15338 | 0.67 | 0.731832 |
Target: 5'- uGUGAaGACCGGCcagaCCAACGAGaaGGCgGu -3' miRNA: 3'- uCAUUaUUGGCCG----GGUUGUUC--CCGgC- -5' |
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7254 | 3' | -53 | NC_001900.1 | + | 2416 | 0.67 | 0.709907 |
Target: 5'- -----gAGCCGGCCCAACucacucuGcGGCUGc -3' miRNA: 3'- ucauuaUUGGCCGGGUUGuu-----C-CCGGC- -5' |
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7254 | 3' | -53 | NC_001900.1 | + | 2532 | 0.68 | 0.687658 |
Target: 5'- cGGUGGcAGcCCGGaCgCAGCcGGGGCCGu -3' miRNA: 3'- -UCAUUaUU-GGCC-GgGUUGuUCCCGGC- -5' |
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7254 | 3' | -53 | NC_001900.1 | + | 1663 | 0.68 | 0.676443 |
Target: 5'- -----aGGCgUGGUUCGGCAAGGGCCa -3' miRNA: 3'- ucauuaUUG-GCCGGGUUGUUCCCGGc -5' |
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7254 | 3' | -53 | NC_001900.1 | + | 13012 | 0.69 | 0.642579 |
Target: 5'- cGUGGUcAgCGGCggCGGCGAGGGCUGa -3' miRNA: 3'- uCAUUAuUgGCCGg-GUUGUUCCCGGC- -5' |
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7254 | 3' | -53 | NC_001900.1 | + | 32737 | 0.69 | 0.642579 |
Target: 5'- cGUAGUcgguGCCuGCCCAGCucGGGUCu -3' miRNA: 3'- uCAUUAu---UGGcCGGGUUGuuCCCGGc -5' |
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7254 | 3' | -53 | NC_001900.1 | + | 15615 | 0.69 | 0.631255 |
Target: 5'- ------cACC-GCCCGGCGAGaGGCCGa -3' miRNA: 3'- ucauuauUGGcCGGGUUGUUC-CCGGC- -5' |
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7254 | 3' | -53 | NC_001900.1 | + | 30795 | 0.69 | 0.597331 |
Target: 5'- uGGUGGacccCCGGCCUuuC-GGGGCCGg -3' miRNA: 3'- -UCAUUauu-GGCCGGGuuGuUCCCGGC- -5' |
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7254 | 3' | -53 | NC_001900.1 | + | 26071 | 0.7 | 0.552578 |
Target: 5'- -------cCCGGCCCAccacgcccggACAAGGGCgGg -3' miRNA: 3'- ucauuauuGGCCGGGU----------UGUUCCCGgC- -5' |
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7254 | 3' | -53 | NC_001900.1 | + | 26661 | 0.7 | 0.552578 |
Target: 5'- aGGUGGUuuuuagcccgagGACCGGaucCCCGAgaGGGGGCCGc -3' miRNA: 3'- -UCAUUA------------UUGGCC---GGGUUg-UUCCCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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