miRNA display CGI


Results 41 - 60 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7255 5' -56.1 NC_001900.1 + 25754 0.68 0.526581
Target:  5'- gGCCGCGccccggcGCA-CGCGGAgcuucaucgucuCGCCGUCa -3'
miRNA:   3'- aCGGCGC-------UGUaGCGCUUau----------GCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 27138 0.68 0.553194
Target:  5'- -aUCGCGAUggugAUCGCGGcgAUuCCGCCg -3'
miRNA:   3'- acGGCGCUG----UAGCGCUuaUGcGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 13783 0.68 0.557491
Target:  5'- gGUCGC-ACAUCGCGGcgucgacuuggucagGUGUGaCCGCCa -3'
miRNA:   3'- aCGGCGcUGUAGCGCU---------------UAUGC-GGCGG- -5'
7255 5' -56.1 NC_001900.1 + 45735 0.68 0.553194
Target:  5'- gGCCGUGA----GCGuGUGCGCCGUg -3'
miRNA:   3'- aCGGCGCUguagCGCuUAUGCGGCGg -5'
7255 5' -56.1 NC_001900.1 + 8786 0.68 0.542496
Target:  5'- cUGCaGCGuccACGaacUCGCGGGgcacuuCGCCGCCg -3'
miRNA:   3'- -ACGgCGC---UGU---AGCGCUUau----GCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 21563 0.68 0.542496
Target:  5'- gGCUGCGAUGgcCGCGA--ACGCCGa- -3'
miRNA:   3'- aCGGCGCUGUa-GCGCUuaUGCGGCgg -5'
7255 5' -56.1 NC_001900.1 + 27563 0.68 0.542496
Target:  5'- cGCCGCuACAUCGCcGAcgGCcggcucaagGCCGUg -3'
miRNA:   3'- aCGGCGcUGUAGCG-CUuaUG---------CGGCGg -5'
7255 5' -56.1 NC_001900.1 + 46559 0.68 0.54143
Target:  5'- cGCCGaaggguucaucauCGACG--GCGAuUACGCCGCg -3'
miRNA:   3'- aCGGC-------------GCUGUagCGCUuAUGCGGCGg -5'
7255 5' -56.1 NC_001900.1 + 3872 0.68 0.521315
Target:  5'- cGCCGuCGAgGUcacgccgacCGCGAAggugacgACGCCGaCCu -3'
miRNA:   3'- aCGGC-GCUgUA---------GCGCUUa------UGCGGC-GG- -5'
7255 5' -56.1 NC_001900.1 + 48982 0.68 0.521315
Target:  5'- -cCUGCGACGaUGCGAAUGC-CgGCCu -3'
miRNA:   3'- acGGCGCUGUaGCGCUUAUGcGgCGG- -5'
7255 5' -56.1 NC_001900.1 + 33829 0.68 0.497366
Target:  5'- cGCCGagGACAUCGUGgAGUcagccaacgagcugACGCUGCa -3'
miRNA:   3'- aCGGCg-CUGUAGCGC-UUA--------------UGCGGCGg -5'
7255 5' -56.1 NC_001900.1 + 33309 0.68 0.542496
Target:  5'- cGCCGUGGCuggUGcCGAAgUACGCCaGCg -3'
miRNA:   3'- aCGGCGCUGua-GC-GCUU-AUGCGG-CGg -5'
7255 5' -56.1 NC_001900.1 + 8715 0.69 0.490175
Target:  5'- -cCCGCGAguUCGUGG--ACGCUGCa -3'
miRNA:   3'- acGGCGCUguAGCGCUuaUGCGGCGg -5'
7255 5' -56.1 NC_001900.1 + 48517 0.69 0.490175
Target:  5'- gUG-UGUGACGU-GCGGuUACGCCGCUg -3'
miRNA:   3'- -ACgGCGCUGUAgCGCUuAUGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 35747 0.69 0.479987
Target:  5'- gGCCGUaGCcaGggGUGAAcACGCCGCCg -3'
miRNA:   3'- aCGGCGcUG--UagCGCUUaUGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 5688 0.69 0.479987
Target:  5'- cGCCGCGACcUCGaaaCGGucACG-CGCCg -3'
miRNA:   3'- aCGGCGCUGuAGC---GCUuaUGCgGCGG- -5'
7255 5' -56.1 NC_001900.1 + 34882 0.69 0.45993
Target:  5'- gUGCCGcCGaACGUCuucagcuuGCGAcc-CGCCGCCc -3'
miRNA:   3'- -ACGGC-GC-UGUAG--------CGCUuauGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 24607 0.69 0.490175
Target:  5'- gUGCCGgGAUGUUGUaGGUguacGCGCCGaCCg -3'
miRNA:   3'- -ACGGCgCUGUAGCGcUUA----UGCGGC-GG- -5'
7255 5' -56.1 NC_001900.1 + 7819 0.69 0.45993
Target:  5'- aGCCGCGccccGCAgCGUGGAUcaccguCGCgGCCg -3'
miRNA:   3'- aCGGCGC----UGUaGCGCUUAu-----GCGgCGG- -5'
7255 5' -56.1 NC_001900.1 + 38435 0.69 0.490175
Target:  5'- gGCUgacgGCGACGagcccgguauggaguUCGCGAAgucgguggccaagACGCUGCCg -3'
miRNA:   3'- aCGG----CGCUGU---------------AGCGCUUa------------UGCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.