miRNA display CGI


Results 61 - 80 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7255 5' -56.1 NC_001900.1 + 7819 0.69 0.45993
Target:  5'- aGCCGCGccccGCAgCGUGGAUcaccguCGCgGCCg -3'
miRNA:   3'- aCGGCGC----UGUaGCGCUUAu-----GCGgCGG- -5'
7255 5' -56.1 NC_001900.1 + 25864 0.7 0.421206
Target:  5'- cGCCGCaagGACAUCGUGGAUgACGgCGagaCg -3'
miRNA:   3'- aCGGCG---CUGUAGCGCUUA-UGCgGCg--G- -5'
7255 5' -56.1 NC_001900.1 + 40319 0.7 0.430703
Target:  5'- cGCUGCGGC--CGUG-GUugGCCGCg -3'
miRNA:   3'- aCGGCGCUGuaGCGCuUAugCGGCGg -5'
7255 5' -56.1 NC_001900.1 + 25738 0.7 0.411835
Target:  5'- gUGCCGCcucACGUCGCGGcgAUGauCCGCg -3'
miRNA:   3'- -ACGGCGc--UGUAGCGCUuaUGC--GGCGg -5'
7255 5' -56.1 NC_001900.1 + 1879 0.7 0.411835
Target:  5'- cUGUCGCucGACAUCaGCGAGU-CGCCGa- -3'
miRNA:   3'- -ACGGCG--CUGUAG-CGCUUAuGCGGCgg -5'
7255 5' -56.1 NC_001900.1 + 24150 0.7 0.390781
Target:  5'- cGCCGCGcCAguacugCGCGAcggucccugccgggAUA-GCCGCCu -3'
miRNA:   3'- aCGGCGCuGUa-----GCGCU--------------UAUgCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 1424 0.7 0.440325
Target:  5'- gGCgGCGACcgccagCGCGuugaACGCCGCa -3'
miRNA:   3'- aCGgCGCUGua----GCGCuua-UGCGGCGg -5'
7255 5' -56.1 NC_001900.1 + 37023 0.7 0.440325
Target:  5'- -aCCGCuGCAUCGCGuuGUACGCggugucaGCCg -3'
miRNA:   3'- acGGCGcUGUAGCGCu-UAUGCGg------CGG- -5'
7255 5' -56.1 NC_001900.1 + 13644 0.7 0.393487
Target:  5'- cGCCaGCGACGUUcaGCGGgcuccgaucaaGUAC-CCGCCg -3'
miRNA:   3'- aCGG-CGCUGUAG--CGCU-----------UAUGcGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 5745 0.71 0.384514
Target:  5'- gGUCGCGGCgGUCGCuGAGUGCGUugaUGUCu -3'
miRNA:   3'- aCGGCGCUG-UAGCG-CUUAUGCG---GCGG- -5'
7255 5' -56.1 NC_001900.1 + 613 0.71 0.350004
Target:  5'- aUGUCGCGGCAUguuccaggcCGCGAGgUugGCCGg- -3'
miRNA:   3'- -ACGGCGCUGUA---------GCGCUU-AugCGGCgg -5'
7255 5' -56.1 NC_001900.1 + 15007 0.71 0.36698
Target:  5'- cUGCUGCGG--UCGgGuauguGUACGUCGCCg -3'
miRNA:   3'- -ACGGCGCUguAGCgCu----UAUGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 14286 0.71 0.357574
Target:  5'- gGCCGCGACcuuguUCGCGuucGCGUagaccuuCGCCa -3'
miRNA:   3'- aCGGCGCUGu----AGCGCuuaUGCG-------GCGG- -5'
7255 5' -56.1 NC_001900.1 + 7901 0.71 0.384514
Target:  5'- gGCCGCGACG--GUGAuccACGCUGCg -3'
miRNA:   3'- aCGGCGCUGUagCGCUua-UGCGGCGg -5'
7255 5' -56.1 NC_001900.1 + 33706 0.72 0.341728
Target:  5'- cGCCuaCGAgGgCGUGGAUGuCGCCGCCg -3'
miRNA:   3'- aCGGc-GCUgUaGCGCUUAU-GCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 6355 0.72 0.324812
Target:  5'- cGCCaGCGACGaugucgccgauguUCGCGGcUGCGcCCGCg -3'
miRNA:   3'- aCGG-CGCUGU-------------AGCGCUuAUGC-GGCGg -5'
7255 5' -56.1 NC_001900.1 + 40746 0.72 0.325603
Target:  5'- aUGUCGUcaGCGcCGCGA--GCGCCGCCg -3'
miRNA:   3'- -ACGGCGc-UGUaGCGCUuaUGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 6027 0.72 0.317755
Target:  5'- -uCCGCGAgCuggaGCGAGUuguccGCGCCGCCa -3'
miRNA:   3'- acGGCGCU-Guag-CGCUUA-----UGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 10346 0.73 0.280658
Target:  5'- aGCacccCGACGUacgcCGCGAAggcugACGCCGCCa -3'
miRNA:   3'- aCGgc--GCUGUA----GCGCUUa----UGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 11502 0.74 0.228581
Target:  5'- aGUCG-GACAUUGCGAAcuCGCCGCg -3'
miRNA:   3'- aCGGCgCUGUAGCGCUUauGCGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.