Results 81 - 90 of 90 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 7255 | 5' | -56.1 | NC_001900.1 | + | 11502 | 0.74 | 0.228581 |
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Target: 5'- aGUCG-GACAUUGCGAAcuCGCCGCg -3' miRNA: 3'- aCGGCgCUGUAGCGCUUauGCGGCGg -5' |
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| 7255 | 5' | -56.1 | NC_001900.1 | + | 22657 | 0.75 | 0.211263 |
|
Target: 5'- cGCCGCcg-AUCuCGAAUGCGCCGUCa -3' miRNA: 3'- aCGGCGcugUAGcGCUUAUGCGGCGG- -5' |
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| 7255 | 5' | -56.1 | NC_001900.1 | + | 6276 | 0.76 | 0.17521 |
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Target: 5'- aGCCGCGaACAUCgGCGAcauCGUCGCUg -3' miRNA: 3'- aCGGCGC-UGUAG-CGCUuauGCGGCGG- -5' |
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| 7255 | 5' | -56.1 | NC_001900.1 | + | 46350 | 0.77 | 0.157156 |
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Target: 5'- uUGCCGCGccaguCGUCGCGAAgccucugGCCGCUg -3' miRNA: 3'- -ACGGCGCu----GUAGCGCUUaug----CGGCGG- -5' |
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| 7255 | 5' | -56.1 | NC_001900.1 | + | 27206 | 0.77 | 0.165963 |
|
Target: 5'- cGCCGCGAucacCAUCGCGAuga-GCCGUg -3' miRNA: 3'- aCGGCGCU----GUAGCGCUuaugCGGCGg -5' |
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| 7255 | 5' | -56.1 | NC_001900.1 | + | 12525 | 0.77 | 0.165963 |
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Target: 5'- cGCCGuCGAacgcCAUCGCGAAgGCGgUCGCCa -3' miRNA: 3'- aCGGC-GCU----GUAGCGCUUaUGC-GGCGG- -5' |
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| 7255 | 5' | -56.1 | NC_001900.1 | + | 6393 | 0.77 | 0.148775 |
|
Target: 5'- gGCCGUGGCcggUGCGGcUGCGCCGaCCa -3' miRNA: 3'- aCGGCGCUGua-GCGCUuAUGCGGC-GG- -5' |
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| 7255 | 5' | -56.1 | NC_001900.1 | + | 15432 | 0.78 | 0.140802 |
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Target: 5'- cGUCGCGACGaCGCGAucgaGCUGCCg -3' miRNA: 3'- aCGGCGCUGUaGCGCUuaugCGGCGG- -5' |
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| 7255 | 5' | -56.1 | NC_001900.1 | + | 40160 | 0.83 | 0.060166 |
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Target: 5'- cUGCCGCGACucugUGCGggUgacGCGCCGCg -3' miRNA: 3'- -ACGGCGCUGua--GCGCuuA---UGCGGCGg -5' |
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| 7255 | 5' | -56.1 | NC_001900.1 | + | 554 | 1.13 | 0.000427 |
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Target: 5'- aUGCCGCGACAUCGCGAAUACGCCGCCg -3' miRNA: 3'- -ACGGCGCUGUAGCGCUUAUGCGGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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