miRNA display CGI


Results 61 - 80 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7255 5' -56.1 NC_001900.1 + 29394 0.67 0.596531
Target:  5'- gGCCaucagucgaGCGAUcUCGCGA--GCGCC-CCa -3'
miRNA:   3'- aCGG---------CGCUGuAGCGCUuaUGCGGcGG- -5'
7255 5' -56.1 NC_001900.1 + 27017 0.67 0.596531
Target:  5'- cGUCGCGACgAUgGCGAc--CGUgGCCc -3'
miRNA:   3'- aCGGCGCUG-UAgCGCUuauGCGgCGG- -5'
7255 5' -56.1 NC_001900.1 + 19549 0.67 0.597623
Target:  5'- cGCCGUGGCcgUGgGAGgaacugcccaaggagACGCUGCg -3'
miRNA:   3'- aCGGCGCUGuaGCgCUUa--------------UGCGGCGg -5'
7255 5' -56.1 NC_001900.1 + 1142 0.67 0.606367
Target:  5'- aGCCGgGGCAggcggCGUGggUggacuuggaggcgGCgguggaGCCGCCg -3'
miRNA:   3'- aCGGCgCUGUa----GCGCuuA-------------UG------CGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 45923 0.67 0.607462
Target:  5'- gGCCGCGAgGaucUCGCGGuccuCGCCuUCg -3'
miRNA:   3'- aCGGCGCUgU---AGCGCUuau-GCGGcGG- -5'
7255 5' -56.1 NC_001900.1 + 16890 0.67 0.607462
Target:  5'- cGUCGgGAuCGUCGCcaucgccGCGCCGCUu -3'
miRNA:   3'- aCGGCgCU-GUAGCGcuua---UGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 16439 0.67 0.607462
Target:  5'- cGCCGCGAUGguaguggcCGCGAAgaagGCUGCg -3'
miRNA:   3'- aCGGCGCUGUa-------GCGCUUaug-CGGCGg -5'
7255 5' -56.1 NC_001900.1 + 13282 0.67 0.607462
Target:  5'- cGCUGaCGACGUUGUGAcguuGUGgGCCaaggaGCCu -3'
miRNA:   3'- aCGGC-GCUGUAGCGCU----UAUgCGG-----CGG- -5'
7255 5' -56.1 NC_001900.1 + 41848 0.67 0.607462
Target:  5'- -aCCGCaGcCAUCGCccu--CGCCGCCg -3'
miRNA:   3'- acGGCG-CuGUAGCGcuuauGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 20164 0.67 0.607462
Target:  5'- cUG-CGCGGCcucGUCGCGggUgaGCGaCUGCUg -3'
miRNA:   3'- -ACgGCGCUG---UAGCGCuuA--UGC-GGCGG- -5'
7255 5' -56.1 NC_001900.1 + 13719 0.67 0.607462
Target:  5'- cGCCGCGAUGU-GCGAccACGaaGCg -3'
miRNA:   3'- aCGGCGCUGUAgCGCUuaUGCggCGg -5'
7255 5' -56.1 NC_001900.1 + 26699 0.67 0.615126
Target:  5'- gGCCGCGACcuuagaGCGAcacuaaugaccugcAuuUAUGCUGCCc -3'
miRNA:   3'- aCGGCGCUGuag---CGCU--------------U--AUGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 44671 0.67 0.618413
Target:  5'- cGCCucgGCGACAgCGUGGA-ACGCgGUCc -3'
miRNA:   3'- aCGG---CGCUGUaGCGCUUaUGCGgCGG- -5'
7255 5' -56.1 NC_001900.1 + 24814 0.66 0.629376
Target:  5'- gGCgGUGGCA-CGCucAU-CGCUGCCg -3'
miRNA:   3'- aCGgCGCUGUaGCGcuUAuGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 5915 0.66 0.629376
Target:  5'- cGCCcCGugGaucUCGCGGAUGaaCCGCUg -3'
miRNA:   3'- aCGGcGCugU---AGCGCUUAUgcGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 10641 0.66 0.629376
Target:  5'- gGCCGUGAuCAcugcggggcUCGcCGggUACGUccagcgguuCGCCa -3'
miRNA:   3'- aCGGCGCU-GU---------AGC-GCuuAUGCG---------GCGG- -5'
7255 5' -56.1 NC_001900.1 + 24095 0.66 0.629376
Target:  5'- cGCgGCGACAagaCGUGGca--GCCGCUg -3'
miRNA:   3'- aCGgCGCUGUa--GCGCUuaugCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 43805 0.66 0.629376
Target:  5'- cGCUGUGAg--CGCGAGcgaaccggaACGCCGCUu -3'
miRNA:   3'- aCGGCGCUguaGCGCUUa--------UGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 36183 0.66 0.633763
Target:  5'- cGCCuCGGCAgccgaaccccucucCGgGAcgACGCCGUCg -3'
miRNA:   3'- aCGGcGCUGUa-------------GCgCUuaUGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 35979 0.66 0.639246
Target:  5'- gUGCU-CGACcagcaugAUCGCGAuguuCGCCGUCg -3'
miRNA:   3'- -ACGGcGCUG-------UAGCGCUuau-GCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.