Results 81 - 90 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7255 | 5' | -56.1 | NC_001900.1 | + | 35168 | 0.66 | 0.640342 |
Target: 5'- cGUCGCGACGaggaccaCGaCGAcUACGCUGaCCu -3' miRNA: 3'- aCGGCGCUGUa------GC-GCUuAUGCGGC-GG- -5' |
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7255 | 5' | -56.1 | NC_001900.1 | + | 6785 | 0.66 | 0.6513 |
Target: 5'- gGCCGCaGCgggguaGUUGCcGAUGgGCUGCCa -3' miRNA: 3'- aCGGCGcUG------UAGCGcUUAUgCGGCGG- -5' |
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7255 | 5' | -56.1 | NC_001900.1 | + | 21082 | 0.66 | 0.6513 |
Target: 5'- cGCCGgGgaACGUguagucaccCGUGAAUACGUCGaCCc -3' miRNA: 3'- aCGGCgC--UGUA---------GCGCUUAUGCGGC-GG- -5' |
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7255 | 5' | -56.1 | NC_001900.1 | + | 39695 | 0.66 | 0.662241 |
Target: 5'- cGCCGUGggaacagauccaGCAgagccagCGCGAugagaucaGCCGCCa -3' miRNA: 3'- aCGGCGC------------UGUa------GCGCUuaug----CGGCGG- -5' |
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7255 | 5' | -56.1 | NC_001900.1 | + | 24037 | 0.66 | 0.662241 |
Target: 5'- aUGCCGaCGACGcCGguuuCGAGguggACcgaGCCGCCa -3' miRNA: 3'- -ACGGC-GCUGUaGC----GCUUa---UG---CGGCGG- -5' |
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7255 | 5' | -56.1 | NC_001900.1 | + | 38342 | 0.66 | 0.663334 |
Target: 5'- gGCCacCGACuUCGCGAAcuccauaccgggcuCGUCGCCg -3' miRNA: 3'- aCGGc-GCUGuAGCGCUUau------------GCGGCGG- -5' |
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7255 | 5' | -56.1 | NC_001900.1 | + | 5238 | 0.66 | 0.672064 |
Target: 5'- aGUCGUGGaagaGCGGucguuccaggcgcGUGCGCCGUCg -3' miRNA: 3'- aCGGCGCUguagCGCU-------------UAUGCGGCGG- -5' |
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7255 | 5' | -56.1 | NC_001900.1 | + | 15246 | 0.66 | 0.673154 |
Target: 5'- aGCCcuUGACcUCG-GAAU-CGCCGCCc -3' miRNA: 3'- aCGGc-GCUGuAGCgCUUAuGCGGCGG- -5' |
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7255 | 5' | -56.1 | NC_001900.1 | + | 24852 | 0.66 | 0.673154 |
Target: 5'- gGCUGUGGUGUCGCccccuuUGCCGCCc -3' miRNA: 3'- aCGGCGCUGUAGCGcuuau-GCGGCGG- -5' |
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7255 | 5' | -56.1 | NC_001900.1 | + | 42079 | 0.66 | 0.673154 |
Target: 5'- gGCCgGUGACGUgGUGGAgcccgaucACGCaagaGCCa -3' miRNA: 3'- aCGG-CGCUGUAgCGCUUa-------UGCGg---CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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