Results 61 - 80 of 90 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7255 | 5' | -56.1 | NC_001900.1 | + | 10453 | 0.69 | 0.45993 |
Target: 5'- cGCCGag----CGCGAggagAUGCGCCGCUg -3' miRNA: 3'- aCGGCgcuguaGCGCU----UAUGCGGCGG- -5' |
|||||||
7255 | 5' | -56.1 | NC_001900.1 | + | 37023 | 0.7 | 0.440325 |
Target: 5'- -aCCGCuGCAUCGCGuuGUACGCggugucaGCCg -3' miRNA: 3'- acGGCGcUGUAGCGCu-UAUGCGg------CGG- -5' |
|||||||
7255 | 5' | -56.1 | NC_001900.1 | + | 1424 | 0.7 | 0.440325 |
Target: 5'- gGCgGCGACcgccagCGCGuugaACGCCGCa -3' miRNA: 3'- aCGgCGCUGua----GCGCuua-UGCGGCGg -5' |
|||||||
7255 | 5' | -56.1 | NC_001900.1 | + | 40319 | 0.7 | 0.430703 |
Target: 5'- cGCUGCGGC--CGUG-GUugGCCGCg -3' miRNA: 3'- aCGGCGCUGuaGCGCuUAugCGGCGg -5' |
|||||||
7255 | 5' | -56.1 | NC_001900.1 | + | 25864 | 0.7 | 0.421206 |
Target: 5'- cGCCGCaagGACAUCGUGGAUgACGgCGagaCg -3' miRNA: 3'- aCGGCG---CUGUAGCGCUUA-UGCgGCg--G- -5' |
|||||||
7255 | 5' | -56.1 | NC_001900.1 | + | 1879 | 0.7 | 0.411835 |
Target: 5'- cUGUCGCucGACAUCaGCGAGU-CGCCGa- -3' miRNA: 3'- -ACGGCG--CUGUAG-CGCUUAuGCGGCgg -5' |
|||||||
7255 | 5' | -56.1 | NC_001900.1 | + | 25738 | 0.7 | 0.411835 |
Target: 5'- gUGCCGCcucACGUCGCGGcgAUGauCCGCg -3' miRNA: 3'- -ACGGCGc--UGUAGCGCUuaUGC--GGCGg -5' |
|||||||
7255 | 5' | -56.1 | NC_001900.1 | + | 13644 | 0.7 | 0.393487 |
Target: 5'- cGCCaGCGACGUUcaGCGGgcuccgaucaaGUAC-CCGCCg -3' miRNA: 3'- aCGG-CGCUGUAG--CGCU-----------UAUGcGGCGG- -5' |
|||||||
7255 | 5' | -56.1 | NC_001900.1 | + | 24150 | 0.7 | 0.390781 |
Target: 5'- cGCCGCGcCAguacugCGCGAcggucccugccgggAUA-GCCGCCu -3' miRNA: 3'- aCGGCGCuGUa-----GCGCU--------------UAUgCGGCGG- -5' |
|||||||
7255 | 5' | -56.1 | NC_001900.1 | + | 7901 | 0.71 | 0.384514 |
Target: 5'- gGCCGCGACG--GUGAuccACGCUGCg -3' miRNA: 3'- aCGGCGCUGUagCGCUua-UGCGGCGg -5' |
|||||||
7255 | 5' | -56.1 | NC_001900.1 | + | 5745 | 0.71 | 0.384514 |
Target: 5'- gGUCGCGGCgGUCGCuGAGUGCGUugaUGUCu -3' miRNA: 3'- aCGGCGCUG-UAGCG-CUUAUGCG---GCGG- -5' |
|||||||
7255 | 5' | -56.1 | NC_001900.1 | + | 15007 | 0.71 | 0.36698 |
Target: 5'- cUGCUGCGG--UCGgGuauguGUACGUCGCCg -3' miRNA: 3'- -ACGGCGCUguAGCgCu----UAUGCGGCGG- -5' |
|||||||
7255 | 5' | -56.1 | NC_001900.1 | + | 14286 | 0.71 | 0.357574 |
Target: 5'- gGCCGCGACcuuguUCGCGuucGCGUagaccuuCGCCa -3' miRNA: 3'- aCGGCGCUGu----AGCGCuuaUGCG-------GCGG- -5' |
|||||||
7255 | 5' | -56.1 | NC_001900.1 | + | 613 | 0.71 | 0.350004 |
Target: 5'- aUGUCGCGGCAUguuccaggcCGCGAGgUugGCCGg- -3' miRNA: 3'- -ACGGCGCUGUA---------GCGCUU-AugCGGCgg -5' |
|||||||
7255 | 5' | -56.1 | NC_001900.1 | + | 33706 | 0.72 | 0.341728 |
Target: 5'- cGCCuaCGAgGgCGUGGAUGuCGCCGCCg -3' miRNA: 3'- aCGGc-GCUgUaGCGCUUAU-GCGGCGG- -5' |
|||||||
7255 | 5' | -56.1 | NC_001900.1 | + | 40746 | 0.72 | 0.325603 |
Target: 5'- aUGUCGUcaGCGcCGCGA--GCGCCGCCg -3' miRNA: 3'- -ACGGCGc-UGUaGCGCUuaUGCGGCGG- -5' |
|||||||
7255 | 5' | -56.1 | NC_001900.1 | + | 6355 | 0.72 | 0.324812 |
Target: 5'- cGCCaGCGACGaugucgccgauguUCGCGGcUGCGcCCGCg -3' miRNA: 3'- aCGG-CGCUGU-------------AGCGCUuAUGC-GGCGg -5' |
|||||||
7255 | 5' | -56.1 | NC_001900.1 | + | 6027 | 0.72 | 0.317755 |
Target: 5'- -uCCGCGAgCuggaGCGAGUuguccGCGCCGCCa -3' miRNA: 3'- acGGCGCU-Guag-CGCUUA-----UGCGGCGG- -5' |
|||||||
7255 | 5' | -56.1 | NC_001900.1 | + | 10346 | 0.73 | 0.280658 |
Target: 5'- aGCacccCGACGUacgcCGCGAAggcugACGCCGCCa -3' miRNA: 3'- aCGgc--GCUGUA----GCGCUUa----UGCGGCGG- -5' |
|||||||
7255 | 5' | -56.1 | NC_001900.1 | + | 25052 | 0.74 | 0.240783 |
Target: 5'- -aCUGgGAcCGUUGCGGcUGCGCCGCCg -3' miRNA: 3'- acGGCgCU-GUAGCGCUuAUGCGGCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home