miRNA display CGI


Results 61 - 80 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7255 5' -56.1 NC_001900.1 + 32683 0.68 0.521315
Target:  5'- gGCCaGCGAacucCGCGAGUuCGuCUGCCg -3'
miRNA:   3'- aCGG-CGCUgua-GCGCUUAuGC-GGCGG- -5'
7255 5' -56.1 NC_001900.1 + 32982 0.67 0.563955
Target:  5'- uUGCCGUGcuuGCAgaacCGCucuu-CGCCGCCa -3'
miRNA:   3'- -ACGGCGC---UGUa---GCGcuuauGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 33309 0.68 0.542496
Target:  5'- cGCCGUGGCuggUGcCGAAgUACGCCaGCg -3'
miRNA:   3'- aCGGCGCUGua-GC-GCUU-AUGCGG-CGg -5'
7255 5' -56.1 NC_001900.1 + 33706 0.72 0.341728
Target:  5'- cGCCuaCGAgGgCGUGGAUGuCGCCGCCg -3'
miRNA:   3'- aCGGc-GCUgUaGCGCUUAU-GCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 33829 0.68 0.497366
Target:  5'- cGCCGagGACAUCGUGgAGUcagccaacgagcugACGCUGCa -3'
miRNA:   3'- aCGGCg-CUGUAGCGC-UUA--------------UGCGGCGg -5'
7255 5' -56.1 NC_001900.1 + 34882 0.69 0.45993
Target:  5'- gUGCCGcCGaACGUCuucagcuuGCGAcc-CGCCGCCc -3'
miRNA:   3'- -ACGGC-GC-UGUAG--------CGCUuauGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 35168 0.66 0.640342
Target:  5'- cGUCGCGACGaggaccaCGaCGAcUACGCUGaCCu -3'
miRNA:   3'- aCGGCGCUGUa------GC-GCUuAUGCGGC-GG- -5'
7255 5' -56.1 NC_001900.1 + 35747 0.69 0.479987
Target:  5'- gGCCGUaGCcaGggGUGAAcACGCCGCCg -3'
miRNA:   3'- aCGGCGcUG--UagCGCUUaUGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 35979 0.66 0.639246
Target:  5'- gUGCU-CGACcagcaugAUCGCGAuguuCGCCGUCg -3'
miRNA:   3'- -ACGGcGCUG-------UAGCGCUuau-GCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 36183 0.66 0.633763
Target:  5'- cGCCuCGGCAgccgaaccccucucCGgGAcgACGCCGUCg -3'
miRNA:   3'- aCGGcGCUGUa-------------GCgCUuaUGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 36705 0.68 0.531867
Target:  5'- cGCCGCGACcgUGCGuucuugugcaGGUACGgCaGCUu -3'
miRNA:   3'- aCGGCGCUGuaGCGC----------UUAUGCgG-CGG- -5'
7255 5' -56.1 NC_001900.1 + 37023 0.7 0.440325
Target:  5'- -aCCGCuGCAUCGCGuuGUACGCggugucaGCCg -3'
miRNA:   3'- acGGCGcUGUAGCGCu-UAUGCGg------CGG- -5'
7255 5' -56.1 NC_001900.1 + 38342 0.66 0.663334
Target:  5'- gGCCacCGACuUCGCGAAcuccauaccgggcuCGUCGCCg -3'
miRNA:   3'- aCGGc-GCUGuAGCGCUUau------------GCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 38435 0.69 0.490175
Target:  5'- gGCUgacgGCGACGagcccgguauggaguUCGCGAAgucgguggccaagACGCUGCCg -3'
miRNA:   3'- aCGG----CGCUGU---------------AGCGCUUa------------UGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 39695 0.66 0.662241
Target:  5'- cGCCGUGggaacagauccaGCAgagccagCGCGAugagaucaGCCGCCa -3'
miRNA:   3'- aCGGCGC------------UGUa------GCGCUuaug----CGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 40160 0.83 0.060166
Target:  5'- cUGCCGCGACucugUGCGggUgacGCGCCGCg -3'
miRNA:   3'- -ACGGCGCUGua--GCGCuuA---UGCGGCGg -5'
7255 5' -56.1 NC_001900.1 + 40319 0.7 0.430703
Target:  5'- cGCUGCGGC--CGUG-GUugGCCGCg -3'
miRNA:   3'- aCGGCGCUGuaGCGCuUAugCGGCGg -5'
7255 5' -56.1 NC_001900.1 + 40619 0.67 0.596531
Target:  5'- aGCCcucaccaucuCGAUGUUGCGGAggACGCCaGCCu -3'
miRNA:   3'- aCGGc---------GCUGUAGCGCUUa-UGCGG-CGG- -5'
7255 5' -56.1 NC_001900.1 + 40746 0.72 0.325603
Target:  5'- aUGUCGUcaGCGcCGCGA--GCGCCGCCg -3'
miRNA:   3'- -ACGGCGc-UGUaGCGCUuaUGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 41848 0.67 0.607462
Target:  5'- -aCCGCaGcCAUCGCccu--CGCCGCCg -3'
miRNA:   3'- acGGCG-CuGUAGCGcuuauGCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.