Results 41 - 60 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7255 | 5' | -56.1 | NC_001900.1 | + | 25670 | 0.67 | 0.57477 |
Target: 5'- cGCCGCGACGUgagGCGGcacgGUcACcgGCCGCUu -3' miRNA: 3'- aCGGCGCUGUAg--CGCU----UA-UG--CGGCGG- -5' |
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7255 | 5' | -56.1 | NC_001900.1 | + | 25052 | 0.74 | 0.240783 |
Target: 5'- -aCUGgGAcCGUUGCGGcUGCGCCGCCg -3' miRNA: 3'- acGGCgCU-GUAGCGCUuAUGCGGCGG- -5' |
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7255 | 5' | -56.1 | NC_001900.1 | + | 24852 | 0.66 | 0.673154 |
Target: 5'- gGCUGUGGUGUCGCccccuuUGCCGCCc -3' miRNA: 3'- aCGGCGCUGUAGCGcuuau-GCGGCGG- -5' |
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7255 | 5' | -56.1 | NC_001900.1 | + | 24814 | 0.66 | 0.629376 |
Target: 5'- gGCgGUGGCA-CGCucAU-CGCUGCCg -3' miRNA: 3'- aCGgCGCUGUaGCGcuUAuGCGGCGG- -5' |
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7255 | 5' | -56.1 | NC_001900.1 | + | 24607 | 0.69 | 0.490175 |
Target: 5'- gUGCCGgGAUGUUGUaGGUguacGCGCCGaCCg -3' miRNA: 3'- -ACGGCgCUGUAGCGcUUA----UGCGGC-GG- -5' |
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7255 | 5' | -56.1 | NC_001900.1 | + | 24150 | 0.7 | 0.390781 |
Target: 5'- cGCCGCGcCAguacugCGCGAcggucccugccgggAUA-GCCGCCu -3' miRNA: 3'- aCGGCGCuGUa-----GCGCU--------------UAUgCGGCGG- -5' |
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7255 | 5' | -56.1 | NC_001900.1 | + | 24095 | 0.66 | 0.629376 |
Target: 5'- cGCgGCGACAagaCGUGGca--GCCGCUg -3' miRNA: 3'- aCGgCGCUGUa--GCGCUuaugCGGCGG- -5' |
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7255 | 5' | -56.1 | NC_001900.1 | + | 24037 | 0.66 | 0.662241 |
Target: 5'- aUGCCGaCGACGcCGguuuCGAGguggACcgaGCCGCCa -3' miRNA: 3'- -ACGGC-GCUGUaGC----GCUUa---UG---CGGCGG- -5' |
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7255 | 5' | -56.1 | NC_001900.1 | + | 22657 | 0.75 | 0.211263 |
Target: 5'- cGCCGCcg-AUCuCGAAUGCGCCGUCa -3' miRNA: 3'- aCGGCGcugUAGcGCUUAUGCGGCGG- -5' |
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7255 | 5' | -56.1 | NC_001900.1 | + | 21563 | 0.68 | 0.542496 |
Target: 5'- gGCUGCGAUGgcCGCGA--ACGCCGa- -3' miRNA: 3'- aCGGCGCUGUa-GCGCUuaUGCGGCgg -5' |
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7255 | 5' | -56.1 | NC_001900.1 | + | 21082 | 0.66 | 0.6513 |
Target: 5'- cGCCGgGgaACGUguagucaccCGUGAAUACGUCGaCCc -3' miRNA: 3'- aCGGCgC--UGUA---------GCGCUUAUGCGGC-GG- -5' |
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7255 | 5' | -56.1 | NC_001900.1 | + | 20164 | 0.67 | 0.607462 |
Target: 5'- cUG-CGCGGCcucGUCGCGggUgaGCGaCUGCUg -3' miRNA: 3'- -ACgGCGCUG---UAGCGCuuA--UGC-GGCGG- -5' |
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7255 | 5' | -56.1 | NC_001900.1 | + | 19549 | 0.67 | 0.597623 |
Target: 5'- cGCCGUGGCcgUGgGAGgaacugcccaaggagACGCUGCg -3' miRNA: 3'- aCGGCGCUGuaGCgCUUa--------------UGCGGCGg -5' |
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7255 | 5' | -56.1 | NC_001900.1 | + | 16890 | 0.67 | 0.607462 |
Target: 5'- cGUCGgGAuCGUCGCcaucgccGCGCCGCUu -3' miRNA: 3'- aCGGCgCU-GUAGCGcuua---UGCGGCGG- -5' |
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7255 | 5' | -56.1 | NC_001900.1 | + | 16439 | 0.67 | 0.607462 |
Target: 5'- cGCCGCGAUGguaguggcCGCGAAgaagGCUGCg -3' miRNA: 3'- aCGGCGCUGUa-------GCGCUUaug-CGGCGg -5' |
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7255 | 5' | -56.1 | NC_001900.1 | + | 15432 | 0.78 | 0.140802 |
Target: 5'- cGUCGCGACGaCGCGAucgaGCUGCCg -3' miRNA: 3'- aCGGCGCUGUaGCGCUuaugCGGCGG- -5' |
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7255 | 5' | -56.1 | NC_001900.1 | + | 15246 | 0.66 | 0.673154 |
Target: 5'- aGCCcuUGACcUCG-GAAU-CGCCGCCc -3' miRNA: 3'- aCGGc-GCUGuAGCgCUUAuGCGGCGG- -5' |
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7255 | 5' | -56.1 | NC_001900.1 | + | 15007 | 0.71 | 0.36698 |
Target: 5'- cUGCUGCGG--UCGgGuauguGUACGUCGCCg -3' miRNA: 3'- -ACGGCGCUguAGCgCu----UAUGCGGCGG- -5' |
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7255 | 5' | -56.1 | NC_001900.1 | + | 14286 | 0.71 | 0.357574 |
Target: 5'- gGCCGCGACcuuguUCGCGuucGCGUagaccuuCGCCa -3' miRNA: 3'- aCGGCGCUGu----AGCGCuuaUGCG-------GCGG- -5' |
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7255 | 5' | -56.1 | NC_001900.1 | + | 13783 | 0.68 | 0.557491 |
Target: 5'- gGUCGC-ACAUCGCGGcgucgacuuggucagGUGUGaCCGCCa -3' miRNA: 3'- aCGGCGcUGUAGCGCU---------------UAUGC-GGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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