miRNA display CGI


Results 41 - 60 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7255 5' -56.1 NC_001900.1 + 35979 0.66 0.639246
Target:  5'- gUGCU-CGACcagcaugAUCGCGAuguuCGCCGUCg -3'
miRNA:   3'- -ACGGcGCUG-------UAGCGCUuau-GCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 36705 0.68 0.531867
Target:  5'- cGCCGCGACcgUGCGuucuugugcaGGUACGgCaGCUu -3'
miRNA:   3'- aCGGCGCUGuaGCGC----------UUAUGCgG-CGG- -5'
7255 5' -56.1 NC_001900.1 + 27017 0.67 0.596531
Target:  5'- cGUCGCGACgAUgGCGAc--CGUgGCCc -3'
miRNA:   3'- aCGGCGCUG-UAgCGCUuauGCGgCGG- -5'
7255 5' -56.1 NC_001900.1 + 1142 0.67 0.606367
Target:  5'- aGCCGgGGCAggcggCGUGggUggacuuggaggcgGCgguggaGCCGCCg -3'
miRNA:   3'- aCGGCgCUGUa----GCGCuuA-------------UG------CGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 13719 0.67 0.607462
Target:  5'- cGCCGCGAUGU-GCGAccACGaaGCg -3'
miRNA:   3'- aCGGCGCUGUAgCGCUuaUGCggCGg -5'
7255 5' -56.1 NC_001900.1 + 42079 0.66 0.673154
Target:  5'- gGCCgGUGACGUgGUGGAgcccgaucACGCaagaGCCa -3'
miRNA:   3'- aCGG-CGCUGUAgCGCUUa-------UGCGg---CGG- -5'
7255 5' -56.1 NC_001900.1 + 36183 0.66 0.633763
Target:  5'- cGCCuCGGCAgccgaaccccucucCGgGAcgACGCCGUCg -3'
miRNA:   3'- aCGGcGCUGUa-------------GCgCUuaUGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 43805 0.66 0.629376
Target:  5'- cGCUGUGAg--CGCGAGcgaaccggaACGCCGCUu -3'
miRNA:   3'- aCGGCGCUguaGCGCUUa--------UGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 10641 0.66 0.629376
Target:  5'- gGCCGUGAuCAcugcggggcUCGcCGggUACGUccagcgguuCGCCa -3'
miRNA:   3'- aCGGCGCU-GU---------AGC-GCuuAUGCG---------GCGG- -5'
7255 5' -56.1 NC_001900.1 + 44671 0.67 0.618413
Target:  5'- cGCCucgGCGACAgCGUGGA-ACGCgGUCc -3'
miRNA:   3'- aCGG---CGCUGUaGCGCUUaUGCGgCGG- -5'
7255 5' -56.1 NC_001900.1 + 1879 0.7 0.411835
Target:  5'- cUGUCGCucGACAUCaGCGAGU-CGCCGa- -3'
miRNA:   3'- -ACGGCG--CUGUAG-CGCUUAuGCGGCgg -5'
7255 5' -56.1 NC_001900.1 + 24150 0.7 0.390781
Target:  5'- cGCCGCGcCAguacugCGCGAcggucccugccgggAUA-GCCGCCu -3'
miRNA:   3'- aCGGCGCuGUa-----GCGCU--------------UAUgCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 5745 0.71 0.384514
Target:  5'- gGUCGCGGCgGUCGCuGAGUGCGUugaUGUCu -3'
miRNA:   3'- aCGGCGCUG-UAGCG-CUUAUGCG---GCGG- -5'
7255 5' -56.1 NC_001900.1 + 25738 0.7 0.411835
Target:  5'- gUGCCGCcucACGUCGCGGcgAUGauCCGCg -3'
miRNA:   3'- -ACGGCGc--UGUAGCGCUuaUGC--GGCGg -5'
7255 5' -56.1 NC_001900.1 + 25864 0.7 0.421206
Target:  5'- cGCCGCaagGACAUCGUGGAUgACGgCGagaCg -3'
miRNA:   3'- aCGGCG---CUGUAGCGCUUA-UGCgGCg--G- -5'
7255 5' -56.1 NC_001900.1 + 35168 0.66 0.640342
Target:  5'- cGUCGCGACGaggaccaCGaCGAcUACGCUGaCCu -3'
miRNA:   3'- aCGGCGCUGUa------GC-GCUuAUGCGGC-GG- -5'
7255 5' -56.1 NC_001900.1 + 14286 0.71 0.357574
Target:  5'- gGCCGCGACcuuguUCGCGuucGCGUagaccuuCGCCa -3'
miRNA:   3'- aCGGCGCUGu----AGCGCuuaUGCG-------GCGG- -5'
7255 5' -56.1 NC_001900.1 + 45735 0.68 0.553194
Target:  5'- gGCCGUGA----GCGuGUGCGCCGUg -3'
miRNA:   3'- aCGGCGCUguagCGCuUAUGCGGCGg -5'
7255 5' -56.1 NC_001900.1 + 8786 0.68 0.542496
Target:  5'- cUGCaGCGuccACGaacUCGCGGGgcacuuCGCCGCCg -3'
miRNA:   3'- -ACGgCGC---UGU---AGCGCUUau----GCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 21563 0.68 0.542496
Target:  5'- gGCUGCGAUGgcCGCGA--ACGCCGa- -3'
miRNA:   3'- aCGGCGCUGUa-GCGCUuaUGCGGCgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.