miRNA display CGI


Results 1 - 11 of 11 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7256 3' -60 NC_001900.1 + 22224 0.66 0.462606
Target:  5'- uGUCUGGgauacgcacggguUCuGGGUCgGGAGCuCCUUCu -3'
miRNA:   3'- gCAGACC-------------AG-CUCGGgCCUCGcGGAAG- -5'
7256 3' -60 NC_001900.1 + 49025 0.66 0.457745
Target:  5'- uCGUCgcaGGUCacgGGGgguagggggguucccCCCaGGGGCGCCUUCc -3'
miRNA:   3'- -GCAGa--CCAG---CUC---------------GGG-CCUCGCGGAAG- -5'
7256 3' -60 NC_001900.1 + 2536 0.67 0.398092
Target:  5'- aCGUC-GGUgGcAGCCCGGAcGCaGCCg-- -3'
miRNA:   3'- -GCAGaCCAgC-UCGGGCCU-CG-CGGaag -5'
7256 3' -60 NC_001900.1 + 18750 0.69 0.286263
Target:  5'- -aUCUGGUCGAgcugcGCCUGcAGCGCCg-- -3'
miRNA:   3'- gcAGACCAGCU-----CGGGCcUCGCGGaag -5'
7256 3' -60 NC_001900.1 + 33705 0.69 0.279299
Target:  5'- aCGUCUGGUagaGcGCCUGGAaCGCCa-- -3'
miRNA:   3'- -GCAGACCAg--CuCGGGCCUcGCGGaag -5'
7256 3' -60 NC_001900.1 + 13462 0.69 0.27247
Target:  5'- gCGUCUGGUgCGuaaCCCGGAGgGCUa-- -3'
miRNA:   3'- -GCAGACCA-GCuc-GGGCCUCgCGGaag -5'
7256 3' -60 NC_001900.1 + 23164 0.7 0.246494
Target:  5'- aCGUCUGcUgGAGCCCGGAG-GCUa-- -3'
miRNA:   3'- -GCAGACcAgCUCGGGCCUCgCGGaag -5'
7256 3' -60 NC_001900.1 + 3999 0.71 0.228385
Target:  5'- cCGUCucggUGGUCGAGCCaggcaaGGAcCGCCUg- -3'
miRNA:   3'- -GCAG----ACCAGCUCGGg-----CCUcGCGGAag -5'
7256 3' -60 NC_001900.1 + 23216 0.76 0.094139
Target:  5'- gGUCUGGUCcucGCCCGGGcuGCGCCcgUCa -3'
miRNA:   3'- gCAGACCAGcu-CGGGCCU--CGCGGa-AG- -5'
7256 3' -60 NC_001900.1 + 11618 0.78 0.061798
Target:  5'- gGUCgGGUCGccGgCCGGAGUGCCUUCg -3'
miRNA:   3'- gCAGaCCAGCu-CgGGCCUCGCGGAAG- -5'
7256 3' -60 NC_001900.1 + 630 1.09 0.000313
Target:  5'- cCGUCUGGUCGAGCCCGGAGCGCCUUCu -3'
miRNA:   3'- -GCAGACCAGCUCGGGCCUCGCGGAAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.