miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7257 3' -54.2 NC_001900.1 + 46310 0.66 0.761917
Target:  5'- aCCUUGAcUGCcacccGUGACCGCGACg- -3'
miRNA:   3'- aGGAGCUaGCGuu---CGUUGGCGCUGac -5'
7257 3' -54.2 NC_001900.1 + 13309 0.73 0.338013
Target:  5'- cUCCUCGGUCGCAGGCucCUGCu---- -3'
miRNA:   3'- -AGGAGCUAGCGUUCGuuGGCGcugac -5'
7257 3' -54.2 NC_001900.1 + 15223 0.68 0.59727
Target:  5'- cCCUCGAagccgaacUCGgGAGCGuGCCuCGGCUGg -3'
miRNA:   3'- aGGAGCU--------AGCgUUCGU-UGGcGCUGAC- -5'
7257 3' -54.2 NC_001900.1 + 24109 0.68 0.60619
Target:  5'- gCCUCGGcaccgagguuggCGCGGGCuucgGCCGCG-CUGg -3'
miRNA:   3'- aGGAGCUa-----------GCGUUCGu---UGGCGCuGAC- -5'
7257 3' -54.2 NC_001900.1 + 37150 0.68 0.619595
Target:  5'- aUCUCGA-CGCAcGGCcACCGUGGCg- -3'
miRNA:   3'- aGGAGCUaGCGU-UCGuUGGCGCUGac -5'
7257 3' -54.2 NC_001900.1 + 27986 0.68 0.63078
Target:  5'- uUCCUCGGgaUCGCcacGGCAGCgGCccagcgaucgGACUGu -3'
miRNA:   3'- -AGGAGCU--AGCGu--UCGUUGgCG----------CUGAC- -5'
7257 3' -54.2 NC_001900.1 + 38464 0.67 0.652025
Target:  5'- uUCCUCGGguaUCGCAacgugaacauccuGGCuGACgGCGACg- -3'
miRNA:   3'- -AGGAGCU---AGCGU-------------UCG-UUGgCGCUGac -5'
7257 3' -54.2 NC_001900.1 + 12759 0.67 0.664298
Target:  5'- -aCUCGAUgaacaGCGGGCGACCGUu-CUGg -3'
miRNA:   3'- agGAGCUAg----CGUUCGUUGGCGcuGAC- -5'
7257 3' -54.2 NC_001900.1 + 37536 0.67 0.675423
Target:  5'- aUCCcguUCGAUgacCGCAAGCAGCUcaaGGCUGu -3'
miRNA:   3'- -AGG---AGCUA---GCGUUCGUUGGcg-CUGAC- -5'
7257 3' -54.2 NC_001900.1 + 2587 0.67 0.675423
Target:  5'- --aUCGcUUGCAGGUuaGACCGCGAgUGg -3'
miRNA:   3'- aggAGCuAGCGUUCG--UUGGCGCUgAC- -5'
7257 3' -54.2 NC_001900.1 + 2216 0.67 0.697535
Target:  5'- cCCUCGggUGCGuuuCGACCGCGAg-- -3'
miRNA:   3'- aGGAGCuaGCGUuc-GUUGGCGCUgac -5'
7257 3' -54.2 NC_001900.1 + 23441 0.66 0.719385
Target:  5'- gUCCUUGAUCGCGuAGUAGCCucugccCGAUc- -3'
miRNA:   3'- -AGGAGCUAGCGU-UCGUUGGc-----GCUGac -5'
7257 3' -54.2 NC_001900.1 + 18520 0.66 0.740878
Target:  5'- uUCCUCGAagccgUUGCcgAAGCccucGGCCGUGAaCUGa -3'
miRNA:   3'- -AGGAGCU-----AGCG--UUCG----UUGGCGCU-GAC- -5'
7257 3' -54.2 NC_001900.1 + 27590 0.66 0.740878
Target:  5'- uUCCUCGG-CGUGAGCAccaagacggugcGCCGCuACa- -3'
miRNA:   3'- -AGGAGCUaGCGUUCGU------------UGGCGcUGac -5'
7257 3' -54.2 NC_001900.1 + 20171 0.69 0.542147
Target:  5'- gCCUCG-UCGCGGGUGA--GCGACUGc -3'
miRNA:   3'- aGGAGCuAGCGUUCGUUggCGCUGAC- -5'
7257 3' -54.2 NC_001900.1 + 9888 0.7 0.509875
Target:  5'- aUCCU-GAUgcugaUGCAGGCGACUGCGgaGCUGa -3'
miRNA:   3'- -AGGAgCUA-----GCGUUCGUUGGCGC--UGAC- -5'
7257 3' -54.2 NC_001900.1 + 33512 0.7 0.509875
Target:  5'- gCUUUGAUCGC-AGCAGCCuCGuACUGc -3'
miRNA:   3'- aGGAGCUAGCGuUCGUUGGcGC-UGAC- -5'
7257 3' -54.2 NC_001900.1 + 9370 0.71 0.447978
Target:  5'- -aCUCGAUCGCAgAGCGACa--GGCUGu -3'
miRNA:   3'- agGAGCUAGCGU-UCGUUGgcgCUGAC- -5'
7257 3' -54.2 NC_001900.1 + 27012 0.77 0.201122
Target:  5'- aUCCUCG-UCGCGacgauGGCGACCGUGGCc- -3'
miRNA:   3'- -AGGAGCuAGCGU-----UCGUUGGCGCUGac -5'
7257 3' -54.2 NC_001900.1 + 6262 0.66 0.75146
Target:  5'- --aUCGA-CGCGGGCGcaGCCGCGAa-- -3'
miRNA:   3'- aggAGCUaGCGUUCGU--UGGCGCUgac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.