miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7257 5' -56.7 NC_001900.1 + 31308 0.66 0.627466
Target:  5'- uGCUGGCUGCccGGUuCgucGCuGACGGCAc- -3'
miRNA:   3'- -CGGCCGACG--CCAuGa--CG-CUGCUGUac -5'
7257 5' -56.7 NC_001900.1 + 23560 0.66 0.627466
Target:  5'- uCCGGUUGUGG--CUGCGcgucaACGACAa- -3'
miRNA:   3'- cGGCCGACGCCauGACGC-----UGCUGUac -5'
7257 5' -56.7 NC_001900.1 + 8638 0.66 0.594607
Target:  5'- gGUCGGCUGCcgGGU-CUcCGACGGCcUGc -3'
miRNA:   3'- -CGGCCGACG--CCAuGAcGCUGCUGuAC- -5'
7257 5' -56.7 NC_001900.1 + 31461 0.68 0.508949
Target:  5'- uGCaGGCUGuuGgcCUGCGGCG-CAUGg -3'
miRNA:   3'- -CGgCCGACgcCauGACGCUGCuGUAC- -5'
7257 5' -56.7 NC_001900.1 + 10639 0.68 0.498576
Target:  5'- gGCCGGUUGUGGcuugggaGCUgGCGugGGguUGg -3'
miRNA:   3'- -CGGCCGACGCCa------UGA-CGCugCUguAC- -5'
7257 5' -56.7 NC_001900.1 + 32870 0.68 0.478123
Target:  5'- aGCCGuuuuucuuGCUGgGGUACUGCGcGgGGCAc- -3'
miRNA:   3'- -CGGC--------CGACgCCAUGACGC-UgCUGUac -5'
7257 5' -56.7 NC_001900.1 + 30483 0.68 0.468053
Target:  5'- aCCGGC-GCGGguucCUGCu-CGACGUGg -3'
miRNA:   3'- cGGCCGaCGCCau--GACGcuGCUGUAC- -5'
7257 5' -56.7 NC_001900.1 + 41790 0.68 0.458092
Target:  5'- -aUGGCUGCGGUG--GCGAUGGCu-- -3'
miRNA:   3'- cgGCCGACGCCAUgaCGCUGCUGuac -5'
7257 5' -56.7 NC_001900.1 + 2460 0.69 0.448246
Target:  5'- cCCGGCUGCGuccggGCUGCcacCGACGUa -3'
miRNA:   3'- cGGCCGACGCca---UGACGcu-GCUGUAc -5'
7257 5' -56.7 NC_001900.1 + 33137 0.69 0.438518
Target:  5'- uCCGGUggcgGCGGUA--GCGGCGGCGg- -3'
miRNA:   3'- cGGCCGa---CGCCAUgaCGCUGCUGUac -5'
7257 5' -56.7 NC_001900.1 + 45235 0.69 0.419432
Target:  5'- -gCGGCauUGCGGUuccuuACUGCGugGGCu-- -3'
miRNA:   3'- cgGCCG--ACGCCA-----UGACGCugCUGuac -5'
7257 5' -56.7 NC_001900.1 + 18664 0.72 0.293611
Target:  5'- gGCCGGCcgUGCGGcGCUGCaGGCG-CAg- -3'
miRNA:   3'- -CGGCCG--ACGCCaUGACG-CUGCuGUac -5'
7257 5' -56.7 NC_001900.1 + 15114 0.74 0.215727
Target:  5'- gGCCGGCguaugugcaGCGGUGcCUGCuucGGCGACGUa -3'
miRNA:   3'- -CGGCCGa--------CGCCAU-GACG---CUGCUGUAc -5'
7257 5' -56.7 NC_001900.1 + 805 0.76 0.146674
Target:  5'- -gCGGCUGCGGUagacguuccagaccGCUGCGGCccguGGCAUGu -3'
miRNA:   3'- cgGCCGACGCCA--------------UGACGCUG----CUGUAC- -5'
7257 5' -56.7 NC_001900.1 + 980 1.01 0.002312
Target:  5'- gGCCGGCUGCGGUACUGCG-CGACAUGa -3'
miRNA:   3'- -CGGCCGACGCCAUGACGCuGCUGUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.