miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7258 5' -56.4 NC_001900.1 + 21797 0.66 0.571625
Target:  5'- cGGCGCUaugGGACAAGCgg--GGAUUCu -3'
miRNA:   3'- uUCGUGGa--CCUGUUCGaggaCCUGAG- -5'
7258 5' -56.4 NC_001900.1 + 20909 0.66 0.556074
Target:  5'- gGGGCACCgagaccgccuucGGC-GGCUCCUGG-CUCa -3'
miRNA:   3'- -UUCGUGGac----------CUGuUCGAGGACCuGAG- -5'
7258 5' -56.4 NC_001900.1 + 13923 0.66 0.549446
Target:  5'- cGAGCACCggcUGGuacCGGGCUCCgguaucgagGaGGCUCa -3'
miRNA:   3'- -UUCGUGG---ACCu--GUUCGAGGa--------C-CUGAG- -5'
7258 5' -56.4 NC_001900.1 + 9376 0.66 0.549446
Target:  5'- -uGCAUCUGGACGGGCaCCgugacgccgaUGGcCUCu -3'
miRNA:   3'- uuCGUGGACCUGUUCGaGG----------ACCuGAG- -5'
7258 5' -56.4 NC_001900.1 + 154 0.66 0.549446
Target:  5'- uGGCuCCUGGugGcucacAGCgCCUGGGCg- -3'
miRNA:   3'- uUCGuGGACCugU-----UCGaGGACCUGag -5'
7258 5' -56.4 NC_001900.1 + 43989 0.66 0.527541
Target:  5'- cAGCACCgGGACGAGCUacaCCuacgUGGAgCUg -3'
miRNA:   3'- uUCGUGGaCCUGUUCGA---GG----ACCU-GAg -5'
7258 5' -56.4 NC_001900.1 + 21048 0.66 0.527541
Target:  5'- uGGUuCCUGGGCAccAGC-CCgaGGGCUCc -3'
miRNA:   3'- uUCGuGGACCUGU--UCGaGGa-CCUGAG- -5'
7258 5' -56.4 NC_001900.1 + 19963 0.67 0.51671
Target:  5'- -cGCAUCgGGAUgcGCUCCgGGACa- -3'
miRNA:   3'- uuCGUGGaCCUGuuCGAGGaCCUGag -5'
7258 5' -56.4 NC_001900.1 + 30806 0.67 0.50597
Target:  5'- gAAGCACC-GGuCGAGCaCCUGGAg-- -3'
miRNA:   3'- -UUCGUGGaCCuGUUCGaGGACCUgag -5'
7258 5' -56.4 NC_001900.1 + 1591 0.67 0.464033
Target:  5'- -uGCGCCUGGcuCAGGaUCUUGGACa- -3'
miRNA:   3'- uuCGUGGACCu-GUUCgAGGACCUGag -5'
7258 5' -56.4 NC_001900.1 + 12287 0.68 0.453833
Target:  5'- cGGCACCuucUGGGCGAaCUgCUGGACg- -3'
miRNA:   3'- uUCGUGG---ACCUGUUcGAgGACCUGag -5'
7258 5' -56.4 NC_001900.1 + 36492 0.68 0.453833
Target:  5'- gAGGUACCa-GACccacAGCUCCUGGACg- -3'
miRNA:   3'- -UUCGUGGacCUGu---UCGAGGACCUGag -5'
7258 5' -56.4 NC_001900.1 + 28698 0.68 0.433805
Target:  5'- -uGUACCaGGGC-AGCUCCUGGcCgUCg -3'
miRNA:   3'- uuCGUGGaCCUGuUCGAGGACCuG-AG- -5'
7258 5' -56.4 NC_001900.1 + 45857 0.68 0.423985
Target:  5'- -cGCACCgugaGGGCAAGC-CgUGGuACUCc -3'
miRNA:   3'- uuCGUGGa---CCUGUUCGaGgACC-UGAG- -5'
7258 5' -56.4 NC_001900.1 + 16840 0.82 0.044867
Target:  5'- cAGCACCUGGGCAAGUcguUCCUGGAUc- -3'
miRNA:   3'- uUCGUGGACCUGUUCG---AGGACCUGag -5'
7258 5' -56.4 NC_001900.1 + 1559 1.08 0.000569
Target:  5'- gAAGCACCUGGACAAGCUCCUGGACUCg -3'
miRNA:   3'- -UUCGUGGACCUGUUCGAGGACCUGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.