miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7260 3' -42.8 NC_001900.1 + 15773 0.66 0.999772
Target:  5'- cUUCGcGGAAUGCGUCGAucgUGAAUa- -3'
miRNA:   3'- -AAGUuCUUUAUGCGGCUua-GCUUAaa -5'
7260 3' -42.8 NC_001900.1 + 39186 0.66 0.999698
Target:  5'- aUCGGGGAGcgcauaGCGCCG-AUCGAGg-- -3'
miRNA:   3'- aAGUUCUUUa-----UGCGGCuUAGCUUaaa -5'
7260 3' -42.8 NC_001900.1 + 29671 0.66 0.999605
Target:  5'- gUCAcuccGGGAUACGCCuuGUCGAAc-- -3'
miRNA:   3'- aAGUu---CUUUAUGCGGcuUAGCUUaaa -5'
7260 3' -42.8 NC_001900.1 + 31420 0.66 0.999605
Target:  5'- --aAGGAGGU-CGCCGAuGUCGAAg-- -3'
miRNA:   3'- aagUUCUUUAuGCGGCU-UAGCUUaaa -5'
7260 3' -42.8 NC_001900.1 + 6756 0.66 0.999595
Target:  5'- gUCGAGAAGgguguCGCCGAgcugauccugcagAUCGAGc-- -3'
miRNA:   3'- aAGUUCUUUau---GCGGCU-------------UAGCUUaaa -5'
7260 3' -42.8 NC_001900.1 + 10031 0.67 0.998939
Target:  5'- cUCGGGGucUACGCCGAucucuUCGGGc-- -3'
miRNA:   3'- aAGUUCUuuAUGCGGCUu----AGCUUaaa -5'
7260 3' -42.8 NC_001900.1 + 33938 0.67 0.998668
Target:  5'- -cCGAGAaccgGAUGCGCCGGAU-GAAg-- -3'
miRNA:   3'- aaGUUCU----UUAUGCGGCUUAgCUUaaa -5'
7260 3' -42.8 NC_001900.1 + 26264 0.68 0.997482
Target:  5'- -cCAAGAAGUGgauCGCCGAG-CGAGa-- -3'
miRNA:   3'- aaGUUCUUUAU---GCGGCUUaGCUUaaa -5'
7260 3' -42.8 NC_001900.1 + 8515 0.68 0.996929
Target:  5'- gUUGAGGAAcuUGCGCCGugacucgguGAUCGAGUUc -3'
miRNA:   3'- aAGUUCUUU--AUGCGGC---------UUAGCUUAAa -5'
7260 3' -42.8 NC_001900.1 + 14805 0.71 0.983911
Target:  5'- gUCAGuGGAGUACGCCGAcaucUCGAc--- -3'
miRNA:   3'- aAGUU-CUUUAUGCGGCUu---AGCUuaaa -5'
7260 3' -42.8 NC_001900.1 + 9043 0.71 0.983911
Target:  5'- gUUCAGGAcGUGCuGCCGAAgcacCGggUUg -3'
miRNA:   3'- -AAGUUCUuUAUG-CGGCUUa---GCuuAAa -5'
7260 3' -42.8 NC_001900.1 + 2061 0.71 0.978938
Target:  5'- cUUCGAGAAuaACGCCGucgUGAAUUUg -3'
miRNA:   3'- -AAGUUCUUuaUGCGGCuuaGCUUAAA- -5'
7260 3' -42.8 NC_001900.1 + 41753 0.74 0.930322
Target:  5'- cUUCGAGAucccGCGCCGGAUCGuGUUc -3'
miRNA:   3'- -AAGUUCUuua-UGCGGCUUAGCuUAAa -5'
7260 3' -42.8 NC_001900.1 + 1949 1.03 0.037318
Target:  5'- cUUCAAGAAAUACGCCGAAUCGAAUUUc -3'
miRNA:   3'- -AAGUUCUUUAUGCGGCUUAGCUUAAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.